BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3914.p
         (512 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310094|ref|YP_003774186.1| hypothetical protein Hsero_0759...   512   e-146

>gi|300310094|ref|YP_003774186.1| hypothetical protein Hsero_0759
           [Herbaspirillum seropedicae SmR1]
          Length = 508

 Score =  512 bits (1318), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 278/485 (57%), Positives = 346/485 (71%), Gaps = 1/485 (0%)

Query: 1   MLMSTWMKRGLLVCAIFLVTWVMFITYWSGANHMPDGGDVILSLLVLPAGFLLLIWGVSK 60
           MLM TW+KR L VCAIF VTWVMFI YWSG+NHMPD  DVIL LLVLP  FLLL+WGV K
Sbjct: 1   MLMGTWIKRSLFVCAIFAVTWVMFIAYWSGSNHMPDISDVILFLLVLPVCFLLLVWGVRK 60

Query: 61  ARTGLAATAAAKAAEAPAAPQADTASAEPTQHPERRWTLAIVATALRTPFGTDAASVVAQ 120
            R  LAA AAA+ A A   P  +  +     H ER WTL I A+ALR+P G DAA++++Q
Sbjct: 61  LRLSLAAAAAARQAAAAQTPAPEAPATP-AHHVERHWTLVIAASALRSPQGDDAATLLSQ 119

Query: 121 MQAQALRLPLDGELTDAEDFPILAGRIAELDAEATRETFLAWQHQRIPNQPTLTEDADEA 180
           +Q Q  RL LD ELTD + FPILAGRI  LD E  +  +LAW   + P        A   
Sbjct: 120 LQKQDARLDLDPELTDRQGFPILAGRIGALDVEGAQSDYLAWLEAQSPEAAQAPTLATGH 179

Query: 181 WRSLALAADIARELGDRLQWHPLLEEYRQAPRHQQESVGLPQLHLLALLPPSWPSAQRLQ 240
            R+LALAADI RELG RL  HP L +Y +AP HQ+E+VGLPQ+HLLALLP  W  AQRLQ
Sbjct: 180 LRTLALAADITRELGQRLLAHPFLTQYLEAPAHQREAVGLPQVHLLALLPARWEGAQRLQ 239

Query: 241 AAQWLGELVAQQGWPSEKMTVLPAAAADTAHPLLHLDRLVATSRDARSQQPSPYLASSYL 300
           AAQWLG+L+AQ+GWP EK+TVLP  A ++ HP+LHLDRL+ATSRD  ++QP+  L S YL
Sbjct: 240 AAQWLGDLLAQEGWPREKITVLPVIAGESVHPMLHLDRLIATSRDVNAKQPTSQLTSPYL 299

Query: 301 AVVIAAQSNLGQDTVQAWLQDKQLLHGPASNGKAPGEAAAGLILADTTQALAMGTADPVL 360
           AV +AA+S+L    V+ W   +QLL   A+ GK+PGE AAGLILAD TQA+A+G    VL
Sbjct: 300 AVAVAAESSLDDAIVEEWETQQQLLCSSANTGKSPGEGAAGLILADATQAIALGADTLVL 359

Query: 361 LHRSSLGRHEQSIDQARRIDGQLLTQLAQAVLRDAEITAEAISLLVTDGDQRASRTDEIM 420
           LHR+++GR ++S D   RI+G+ L++L Q  L+DA +   AI LL TD D R SRT+EIM
Sbjct: 360 LHRAAVGRKDKSADAPGRIEGEFLSRLVQGALQDAGVAPAAIGLLATDSDYRGSRTEEIM 419

Query: 421 KLGEAVLPDIDLGKHCIKVGATCGSAGLGTVLSALVLAHAATEQSGEPSLCVSNEDAHER 480
           K+G   LP+IDLG  C+K+GA CG+AG  TV+SALVLAH+A+E  G+ +LCVSN+ AHER
Sbjct: 420 KMGYDSLPEIDLGSQCVKLGAGCGAAGAATVMSALVLAHSASEALGQAALCVSNDHAHER 479

Query: 481 AVIAL 485
           A + +
Sbjct: 480 AAMVV 484


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.129    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,447,821
Number of extensions: 55779
Number of successful extensions: 240
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 423
Effective length of database: 1,198,455
Effective search space: 506946465
Effective search space used: 506946465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)