BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3913.p (85 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310095|ref|YP_003774187.1| hypothetical protein Hsero_0760... 134 2e-33 gi|300310251|ref|YP_003774343.1| hypothetical protein Hsero_0918... 96 6e-22 gi|300313609|ref|YP_003777701.1| hypothetical protein Hsero_4324... 69 5e-14 gi|300310277|ref|YP_003774369.1| hypothetical protein Hsero_0944... 69 8e-14 gi|300309625|ref|YP_003773717.1| hypothetical protein Hsero_0283... 62 9e-12 >gi|300310095|ref|YP_003774187.1| hypothetical protein Hsero_0760 [Herbaspirillum seropedicae SmR1] Length = 85 Score = 134 bits (336), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 63/85 (74%), Positives = 78/85 (91%) Query: 1 MSRPIIVIGDKTSHGGSVIEGSGQTLVGNKLVARIGDQVSCPRHGTTRIVSGDATMVVDG 60 MS+P+IV+GDKTSHGG+VI+ SG T+VG K VAR+GD+VSCPRHG+T I SGD TM++DG Sbjct: 1 MSQPVIVLGDKTSHGGTVIQASGVTMVGGKQVARVGDKVSCPRHGSTTIASGDPTMIIDG 60 Query: 61 SPVARDGDKTACGAVLIASQASTTL 85 +PVARDGDKTACGAVLIASQA+T++ Sbjct: 61 APVARDGDKTACGAVLIASQATTSV 85 >gi|300310251|ref|YP_003774343.1| hypothetical protein Hsero_0918 [Herbaspirillum seropedicae SmR1] Length = 137 Score = 95.5 bits (236), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 50/85 (58%), Positives = 59/85 (69%), Gaps = 1/85 (1%) Query: 1 MSRPIIVIGDKTSHGGSVIEGSGQTLVGNKLVARIGDQVSCPR-HGTTRIVSGDATMVVD 59 MSRP I +GDKTSHGG+VI G L+ K VA IGD +CPR GT I SG M+ + Sbjct: 1 MSRPFITVGDKTSHGGTVISGDQSFLIHGKAVASIGDLTTCPRCKGTFAITSGAEDMITN 60 Query: 60 GSPVARDGDKTACGAVLIASQASTT 84 G ARDGD+TACGA+LIA+QA TT Sbjct: 61 GKAPARDGDRTACGAILIATQALTT 85 >gi|300313609|ref|YP_003777701.1| hypothetical protein Hsero_4324 [Herbaspirillum seropedicae SmR1] Length = 88 Score = 69.3 bits (168), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 40/87 (45%), Positives = 51/87 (58%), Gaps = 2/87 (2%) Query: 1 MSRPIIVIGDKTSHGGSVIEGSGQTLVGNKLVARIGDQVSCPR--HGTTRIVSGDATMVV 58 M PII +GD TSHGG VI S + +AR+GD VSCPR HGTT I+ G T ++ Sbjct: 1 MPLPIIRLGDSTSHGGKVISASPTHTLHGIGIARVGDLVSCPREGHGTTPIIEGAPTYLI 60 Query: 59 DGSPVARDGDKTACGAVLIASQASTTL 85 VA G + ACG LI+S A+ + Sbjct: 61 GDRMVALQGHRAACGCSLISSLATASY 87 >gi|300310277|ref|YP_003774369.1| hypothetical protein Hsero_0944 [Herbaspirillum seropedicae SmR1] Length = 88 Score = 68.6 bits (166), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 2/86 (2%) Query: 1 MSRPIIVIGDKTSHGGSVIEGSGQTLVGNKLVARIGDQVSCPR--HGTTRIVSGDATMVV 58 M+ II +GD TSHGG VI S L+G VAR+GD+V CP HG I+ G + + Sbjct: 1 MAAAIIRLGDPTSHGGRVITASTTHLIGGLGVARVGDKVMCPLPGHGVNAIIEGAPSFQI 60 Query: 59 DGSPVARDGDKTACGAVLIASQASTT 84 DG VA G + ACG L+++ A+ T Sbjct: 61 DGRNVALHGQRAACGCTLVSTLATAT 86 >gi|300309625|ref|YP_003773717.1| hypothetical protein Hsero_0283 [Herbaspirillum seropedicae SmR1] Length = 87 Score = 62.0 bits (149), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 2/81 (2%) Query: 5 IIVIGDKTSHGGSVIEGSGQTLVGNKLVARIGDQVSCPRHGTT--RIVSGDATMVVDGSP 62 +I + D TSHGG V+ + V K VAR+GD+ SCP G IV G T+ +DG Sbjct: 4 VIRLEDPTSHGGKVVSADARVAVRGKAVARVGDRCSCPVQGHVGCVIVEGHPTIEIDGIA 63 Query: 63 VARDGDKTACGAVLIASQAST 83 VA DG + +CGAVLI++ +++ Sbjct: 64 VAFDGHRISCGAVLISTLSNS 84 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.132 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 275,852 Number of extensions: 9925 Number of successful extensions: 53 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 9 Length of query: 85 Length of database: 1,619,870 Length adjustment: 55 Effective length of query: 30 Effective length of database: 1,359,445 Effective search space: 40783350 Effective search space used: 40783350 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 123 (52.0 bits)