BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3912.p
         (279 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313313|ref|YP_003777405.1| peptidase M15B and M15C, D,D-ca...   490   e-140
gi|300310096|ref|YP_003774188.1| transmembrane protein [Herbaspi...   422   e-119

>gi|300313313|ref|YP_003777405.1| peptidase M15B and M15C,
           D,D-carboxypeptidase VanY/endolysins protein
           [Herbaspirillum seropedicae SmR1]
          Length = 279

 Score =  490 bits (1262), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 231/279 (82%), Positives = 253/279 (90%)

Query: 1   VLFLLIAAYLLATGFAMWLLLFPSGRVRTLRFLNARLSGLRNRWERWNRTSDEVIAGTTS 60
           ++FLLIA YLL +G AMWLLLFPSGR +TLRFL  R S LRNRWER+N   D++IA  TS
Sbjct: 1   MVFLLIATYLLVSGLAMWLLLFPSGRAQTLRFLQTRCSRLRNRWERYNDRGDQMIAEVTS 60

Query: 61  NLRSSLTAGVNYVRNNYVITSTIVVLLVGPAIIAYLLSGKSMLHGFEDTDHVTNSQIAEL 120
           N+RSSLT+ +NYVR NY++ S IV LL+GPAI+A LL+GKSML GF+DT   TNSQIAEL
Sbjct: 61  NIRSSLTSRLNYVRKNYLVLSIIVALLIGPAIVALLLAGKSMLQGFDDTQRATNSQIAEL 120

Query: 121 LKGEQLVPPPPLPPEMFTTAEVVQVRPMLVNASRNWQLLNPEYAQRLLLVFKIMKEKHGY 180
           LKGEQLV PPPLPP+MFTTAEVVQVRPMLV+ASRNWQLLNPEYAQRLLLVFKIMKEKHGY
Sbjct: 121 LKGEQLVAPPPLPPDMFTTAEVVQVRPMLVDASRNWQLLNPEYAQRLLLVFKIMKEKHGY 180

Query: 181 DMALIEGYRSPERQNMLAGMGGNVTNAAAFQSYHQYGLAGDCAFVRNGKLVISEKDPWAM 240
           +MALIEGYRSP+RQNMLAGMGG +TNAAAFQSYHQYGLAGDCAFVRNGKLVISEKDPWAM
Sbjct: 181 EMALIEGYRSPQRQNMLAGMGGGITNAAAFQSYHQYGLAGDCAFVRNGKLVISEKDPWAM 240

Query: 241 EGYRLYGEVAESVGLTWGGRWKLMDFGHTEYRMPGVMKR 279
            GYRLYGEVAESVGLTWGGRWKLMDFGHTEYRMPGVMK+
Sbjct: 241 AGYRLYGEVAESVGLTWGGRWKLMDFGHTEYRMPGVMKK 279


>gi|300310096|ref|YP_003774188.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 279

 Score =  422 bits (1085), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/267 (81%), Positives = 239/267 (89%)

Query: 13  TGFAMWLLLFPSGRVRTLRFLNARLSGLRNRWERWNRTSDEVIAGTTSNLRSSLTAGVNY 72
           T FAMWLLLFPSGR  TL FLN+R++ LR RW+RWNR  D V+AGT S +R S +A + Y
Sbjct: 13  TCFAMWLLLFPSGRELTLAFLNSRMASLRQRWDRWNRKGDAVLAGTASGIRHSFSASIGY 72

Query: 73  VRNNYVITSTIVVLLVGPAIIAYLLSGKSMLHGFEDTDHVTNSQIAELLKGEQLVPPPPL 132
           VR NYVI   +++LL+GPAI+A++LSGKSML GFE  D V N+QIAELLKGE LVPPPPL
Sbjct: 73  VRGNYVIVGLVLLLLIGPAILAFMLSGKSMLGGFEPADRVANAQIAELLKGELLVPPPPL 132

Query: 133 PPEMFTTAEVVQVRPMLVNASRNWQLLNPEYAQRLLLVFKIMKEKHGYDMALIEGYRSPE 192
           PP+MFTTAEVVQVRPMLV+ASRNWQLLNPEYAQRLLLVFKIMKEK+G +MALIEGYRSPE
Sbjct: 133 PPDMFTTAEVVQVRPMLVDASRNWQLLNPEYAQRLLLVFKIMKEKYGIEMALIEGYRSPE 192

Query: 193 RQNMLAGMGGNVTNAAAFQSYHQYGLAGDCAFVRNGKLVISEKDPWAMEGYRLYGEVAES 252
           RQNMLAGMGGNVTNAAAFQSYHQYGLAGDCAFVRNGKLVISEKDPWAME YR YGEVAES
Sbjct: 193 RQNMLAGMGGNVTNAAAFQSYHQYGLAGDCAFVRNGKLVISEKDPWAMEAYRHYGEVAES 252

Query: 253 VGLTWGGRWKLMDFGHTEYRMPGVMKR 279
           VGLTWGGRWKLMDFGHTEYR+PGVMK+
Sbjct: 253 VGLTWGGRWKLMDFGHTEYRLPGVMKK 279


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 857,233
Number of extensions: 32774
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 2
Length of query: 279
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 195
Effective length of database: 1,222,130
Effective search space: 238315350
Effective search space used: 238315350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)