BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3910.p (981 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310098|ref|YP_003774190.1| VGR-related protein [Herbaspiri... 1544 0.0 gi|300310083|ref|YP_003774175.1| VGR-related type VI secretion s... 308 1e-84 gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspiri... 305 2e-83 gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspiri... 279 9e-76 gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion s... 265 1e-71 >gi|300310098|ref|YP_003774190.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 982 Score = 1544 bits (3998), Expect = 0.0, Method: Compositional matrix adjust. Identities = 765/978 (78%), Positives = 858/978 (87%), Gaps = 1/978 (0%) Query: 1 MSELLNQLVQFTSATRLYSLSLGGEAASADLLVEAFAAAEGLHGVGLREVIALSLDAGLP 60 MS+LL QL+QFT A+RLYSLSLG A + +LLVEAFAA+EGLH VGLREVI LSLDAGL Sbjct: 1 MSDLLTQLMQFTGASRLYSLSLGDAAPAGELLVEAFAASEGLHAVGLREVIVLSLDAGLR 60 Query: 61 LTSLIGRQASLQVRLSDGSTSRFSGLINEAAKLGSEGGFARYRLRLVPWIWLLGQSRNSR 120 L SLIG++A+L LSDGS ++FSGL+NEAAKLGSEGG ARYRLR+VPW+WLL QS NSR Sbjct: 61 LKSLIGQRATLVTTLSDGSRTQFSGLVNEAAKLGSEGGLARYRLRIVPWVWLLSQSHNSR 120 Query: 121 VWQDKTVIEIVEDVFAEYAPHAAWTWSDEVASFMQDVPPRSYVIQYRESNLEFVSRLLAA 180 VWQDKTVI+IVEDVFA+YAPHAAWTW+DEVA FMQ V PRSY IQYRESNL FVSRLLAA Sbjct: 121 VWQDKTVIDIVEDVFADYAPHAAWTWTDEVAPFMQQVQPRSYTIQYRESNLAFVSRLLAA 180 Query: 181 EGLSWRVEESADAAAGHRLALFADSSVKGAFPEDASSAAALGGTGIRFHGASAREQQDSI 240 EGLSWRVEESADAA+GHRL LFADS+ AFPED +S + LGG+GIRFH +ARE+QDSI Sbjct: 181 EGLSWRVEESADAASGHRLVLFADSTSPRAFPEDLTSTSPLGGSGIRFHAGTAREEQDSI 240 Query: 241 QALAARRTLQSATFTLLSYDDRNKQAIATSLPTNHEFGHKDAPRLESYDSPGLSAYRDTA 300 QALAARR LQ A+FTLLSYD ++KQA+ATSLPT HEFG KDAPRLESYDSPGL AY D A Sbjct: 241 QALAARRALQPASFTLLSYDYKSKQAVATSLPTRHEFGGKDAPRLESYDSPGLYAYTDAA 300 Query: 301 QADRYAQLHLQASEARNKLWQGRSTVRTLRPGTRFSLAQGPLGLTAAAAGQPVEYALLSV 360 +AD YA+LHL+ASEARNKLWQ RSTVRTLRPGTRF+LA GPLGL+AA G P +YA+LSV Sbjct: 301 EADHYARLHLEASEARNKLWQARSTVRTLRPGTRFTLADGPLGLSAAQDGAPRQYAVLSV 360 Query: 361 FSIGVNNLPKDAEEGLAELFGPLPPLLEECVAACQAQQQSLYGALSPDSPPLASQLELDG 420 S+GVNNLPKDA EGLAELFGP+PPLLE+CVAAC+ Q L+G PDS L Q ++ G Sbjct: 361 MSVGVNNLPKDAAEGLAELFGPIPPLLEDCVAACEEGQSLLHGQSGPDSLQLLGQTDIAG 420 Query: 421 VIAQARKLGYANAFEAIRADVVWRPVLADGTGLRLHPRATARGSQSAIVVGPDGNTRANG 480 VIAQAR+LGYANAFEAIRADV+WRPVLADGTGLRLH RATARGSQSAIVVGP G T A+ Sbjct: 421 VIAQARQLGYANAFEAIRADVIWRPVLADGTGLRLHARATARGSQSAIVVGPQGETSASS 480 Query: 481 ADEIYCDRLGRVRIRFHWQGRNNDAGATCWVRVAQRAAAGGHGMQFLPRIGQEVLVQFLE 540 A EI+CDRLGRVRIRFHWQGRNNDA ATCWVRVAQRAA+GG GMQFLPRIGQEVLVQF+E Sbjct: 481 AGEIHCDRLGRVRIRFHWQGRNNDAAATCWVRVAQRAASGGAGMQFLPRIGQEVLVQFIE 540 Query: 541 DDIDRPIILGALYNGQGEGAQAPTPGGE-ARSDAQDGSKVFASASDFAPSGQGNVAGGNA 599 DDIDRP+I+GALYNG+GEGA APTPGG+ A++ + D ++ F SA+D SGQGN+AGGNA Sbjct: 541 DDIDRPVIVGALYNGRGEGAAAPTPGGDTAQAGSDDPARAFTSATDLQASGQGNLAGGNA 600 Query: 600 PTWHGGSQDGDGHRNAAAQWGIRSKEFGGAGYNQLLFDDTDAQGRVQLKTSQAATELNLG 659 PTWHGGSQD DGH N AAQWGIRSKEFGG+GYNQ++FDDTDAQGR+QLKT+Q+ +ELNLG Sbjct: 601 PTWHGGSQDSDGHGNTAAQWGIRSKEFGGSGYNQIVFDDTDAQGRIQLKTTQSGSELNLG 660 Query: 660 HLIHAADNYRGSFRGTGAELRTDAYGAIRAASGILFSSYRIVQNAGSRDPAGDNAGGMAL 719 HLIH ADNYRGSFRGTGAELRTDAYGA+RA GILFSSY+I QNA SRDPAGDN GGMAL Sbjct: 661 HLIHTADNYRGSFRGTGAELRTDAYGALRAGGGILFSSYKIEQNAASRDPAGDNVGGMAL 720 Query: 720 LKQAALLGKTFNEATVTHKTVALASHVGPTQANASIINDNAAPLEAIRTAAAGMVDGAPD 779 LKQAALLGKTFNEAT+THKTV LASH+GPTQA+AS IND+AAPLEAIR AA+GMVDG+P+ Sbjct: 721 LKQAALLGKTFNEATLTHKTVGLASHLGPTQASASTINDSAAPLEAIRVAASGMVDGSPE 780 Query: 780 KSGEDVAAANTQPSDGKLPQSTSALIGIAAREGLGAVAGQHLQLANGETVSFLSGQDSQH 839 SG DVAAANTQ + KLP ST+ALIGIAA+EGLGAVAGQH+QLANGETV+ LSG DSQ Sbjct: 781 NSGADVAAANTQTGESKLPHSTAALIGIAAKEGLGAVAGQHMQLANGETVNLLSGADSQQ 840 Query: 840 VSGNQLRLRSGQALGVLAGAIAAGEGGQGLQMIAAQQNIDVQAQAETLAVQARDQLSVVS 899 V+GNQ RLRSGQALGVLAGA+AAGEGG GLQMIAAQ+NIDVQAQA+ L VQARDQ+ V+S Sbjct: 841 VAGNQYRLRSGQALGVLAGAMAAGEGGTGLQMIAAQKNIDVQAQADGLTVQARDQVRVIS 900 Query: 900 ANASVDWAAAKKISLSTAGGANITIEGGNITVQCPGKLTIHAAQKVFEGPVRNDAQLPLL 959 ANA VDWAAAKKI+LSTAGGANITIEGGNITVQCPGKLTIHAAQK+F GPV LP + Sbjct: 901 ANAGVDWAAAKKITLSTAGGANITIEGGNITVQCPGKLTIHAAQKLFAGPVSKTLPLPQM 960 Query: 960 PGSICVECLLKARAAGSP 977 P S+C +C+L A G+P Sbjct: 961 PNSVCKDCILNAMKQGAP 978 >gi|300310083|ref|YP_003774175.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 944 Score = 308 bits (790), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 289/938 (30%), Positives = 423/938 (45%), Gaps = 129/938 (13%) Query: 49 EVIALSLDAGLPLTSLIGRQASLQVRLSDGSTSRFSGLINEAAKLGSEGGFARYRLRLVP 108 ++ LSL+A + L L+G+ L++ +DG F G + G+ GG ARY L + P Sbjct: 65 QLSCLSLNADISLRKLLGQPVLLELD-TDGGARAFHGHVTACRMEGANGGMARYLLTIEP 123 Query: 109 WIWLLGQSRNSRVWQDKTVIEIVEDVFAEYAPHA----AWTWSDEVASFMQDVPPRSYVI 164 W+ L R+S V+QD + I+E VFA+Y AW + AS RS Sbjct: 124 WLSFLRHRRDSAVFQDMSAPAIIEAVFADYRGQGRLQPAWRLDLQDASAY---AKRSLAT 180 Query: 165 QYRESNLEFVSRLLAAEGLSWRVEESAD---AAAGHRLALFADSSVKGAFPEDASSAAAL 221 QY+E++L FV+RL+ EGL + +E D A+ G + AD + G+F +A S A Sbjct: 181 QYQETDLAFVTRLMVEEGLFYYIEHQGDSNSASLGSHTVVIADHN--GSFKPNARSTVAF 238 Query: 222 GGTGIRFHGASAREQQDSIQALAARRTLQSATFTLLSYDDRNKQAIATSLPTNHEFGHKD 281 T +A QD+I + R Q+ +L++D R A S ++ E H D Sbjct: 239 AQT-------NAVMAQDNIDRWRSVRRWQTNAVEILTWDYRQTAVRAASTASSGENAH-D 290 Query: 282 APRLESYDSPGLSAYRDTAQADRYAQLHLQASEARNKLWQGRSTVRTLRPGTRFSLAQGP 341 L S D+PG QA R A +QA E RNK++ G TVR+ PGT F+L Sbjct: 291 KLVLTSRDAPGQYINESPEQAQRQALNQMQAIEVRNKVFTGAGTVRSFLPGTTFTLTG-- 348 Query: 342 LGLTAAAAGQPVEYALLSVFSIGVNNLPKDAEEGLAELFGPLPPLLEECVAACQAQQQSL 401 G ++ LL V NNL D + G+ L G Q Sbjct: 349 --HYDHDGGDDDQFVLLRVVHQAHNNLSADLKAGVTALLG-----------QAQLDDHDH 395 Query: 402 YGALSPDSPPLASQLELDGVIAQARKLGYANAFEAIRADVVWRPVLADGTGLRLHPRATA 461 G+L + L QAR + Y N FEAIR + +RP+L D G RL+P+ A Sbjct: 396 KGSLLDTA--------LRSADTQARPV-YRNRFEAIRNKIPYRPLLVDAQGERLYPKPQA 446 Query: 462 RGSQSAIVVGPDGNTRANGADEIYCDRLGRVRIRFHWQ-GRNNDAG-------------- 506 G QSA+VVG G ++ DR R+R++FHWQ G + +G Sbjct: 447 HGQQSAVVVGAQGQA-------VHTDRDNRIRVQFHWQRGERSHSGLSSPTPDDHVGAPA 499 Query: 507 ---ATCWVRVAQ---RAAAGGHGMQFLPRIGQEVLVQFLEDDIDRPIILGALYNGQGEGA 560 A WVRV A G Q +PR+GQEVL+ F+E DIDRP+++G LYNG+G Sbjct: 500 NEQAGTWVRVLAGLAPTAGANWGGQAVPRVGQEVLIDFIEGDIDRPVVIGTLYNGRG--- 556 Query: 561 QAPTPGGEARSDAQDGSKVFASASDFAPSGQG-NVAGGNAPTWHGGSQDGDGHRNAAAQW 619 D G++ +GQG A GNAP W GS H +AA Sbjct: 557 ----------VDNAQGNQ----------AGQGAGSATGNAPAWFPGS--SGAHNHAAVLS 594 Query: 620 GIRSKEF-----GGAGYNQLLFDDTDAQGRVQLK----TSQAATELNLGHLIHAADNYRG 670 GI+++ GG GYNQL+FDD+ Q R L+ A+ELNLG L DN R Sbjct: 595 GIKTQALSASQSGGGGYNQLVFDDSPGQARAALQQHADAHDGASELNLGLLRQQTDNQRL 654 Query: 671 SFRGTGAELRTDAYGAIRAASGILFSSYRIVQNAGSRDPAGDNAGGMALLKQAALLGKTF 730 + G G EL+T A+RA G+L S+ + + D G++ L ++A + Sbjct: 655 ATTGQGFELKTLYSAALRAGQGLLVSTEKSI------SAQLDMTQGLSQLSESAQKQQQL 708 Query: 731 NEATVTHKTVALASHVGPTQANASIINDNAAPLEAIRTAAAGMVDGAPDKSGEDVAAANT 790 E H + ++ L+A ++A+ G S ++A T Sbjct: 709 AETAQKHNARLEGESDAAKLPAVEAMGESIEVLKATQSASTGSS-----GSDGQGSSATT 763 Query: 791 QPSDGKLPQSTSALIGIAAREGLGAVAGQHLQLANGETVSFLSGQDSQHVSGNQLRL--R 848 + PQ + +++ G+ AV +A G T S +G+D ++ L + Sbjct: 764 ATTAFSAPQ-----LQLSSPAGIAAVTPASAIIAAGVTSSVTAGKDINQIAQGNLHYLSK 818 Query: 849 SGQALGVLAGAIAAGEGGQ--GLQMIAAQQNIDVQAQAETLAVQARDQLSVVSANASVDW 906 SG +L A + Q G+ + AA + VQ+QA + + QL+V S V Sbjct: 819 SGISLFTYGKASNGSKPNQETGMALHAAAGKVSVQSQAGQTLLTSAKQLTVASVGKDVSV 878 Query: 907 AAAKKISLSTAGGANITIEGGNITVQCPGKLTIHAAQK 944 A + + L+ A GA + +EGGNI V PG + A+ K Sbjct: 879 AGKQHVQLA-AQGAWLRLEGGNIEVHGPGAMEFRASAK 915 >gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 954 Score = 305 bits (780), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 300/998 (30%), Positives = 453/998 (45%), Gaps = 182/998 (18%) Query: 31 LLVEAFAAAEGLHGVGLREVIALSLDAGLPLTSLIGRQASLQVRLSDGSTSRFSGLINEA 90 L VE F E ++ ++ ALS+ L L IG + SL++ +DG T + G +A Sbjct: 42 LAVERFEGEESVNDNFRFDIDALSISTDLDLKQFIGAEISLRLLQADGGTRAWHGYCTQA 101 Query: 91 AKLGSEGGFARYRLRLVPWIWLLGQSRNSRVWQDKTVIEIVEDVFAEYAPHAAWTWSDEV 150 + LG++GG ARYRLRL ++ L + +S ++QD TV +I V EY P A +S EV Sbjct: 102 SWLGADGGLARYRLRLESFLAFLDRRHDSFLFQDMTVTDIAAAVLKEY-PQA--NFSLEV 158 Query: 151 ASFMQDVPPRSYVIQYRESNLEFVSRLLAAEGLSWRVEESADAA----------AGHRLA 200 Q + R QYRE++ F+ R+LA+EGL++R E D A A H+L Sbjct: 159 T---QTLAKRDICTQYRETDYAFLRRILASEGLNFRFEHEQDDATQQHDQSQPHARHKLV 215 Query: 201 LFADSSVKGAFPEDASSAAALGGTGIRFHGASAREQQDSIQALAARRTLQSATFTLLSYD 260 +F ++ A P G IRFH +A E D+I AA R+++ L S+ Sbjct: 216 IFDRNAKAPALPG--------GDEYIRFHRVAAMEASDAITDFAAVRSVRPNGVALASWH 267 Query: 261 DRNKQAIATSLPTNHEFGHKDA---PRLESYDSPGLSAYRDTAQADRYAQLHLQASEARN 317 S P++ E DA P L YD G + D A +AQL LQA E +N Sbjct: 268 PEK-----LSSPSHEEGSTLDAGELPSLPVYDGTGQQDFADQDAAAAHAQLMLQALEMQN 322 Query: 318 KLWQGRSTVRTLRPGTRFSLAQG---PLGLTAAAAGQPVEYALLSVFSIGVNNLPKDAEE 374 K ++G R L G RF+L Q P G A + ++SV NN+ + Sbjct: 323 KRFEGAGAARQLAAGARFTLLQHERYPEGENA--------FKVVSVRHAARNNVSANITR 374 Query: 375 GLAELFGPLPPLLEECVAACQAQQQSLYGALSPDSPPLASQLELDGVIAQARKLGYANAF 434 LA G +L+G ++ E D + Y N+F Sbjct: 375 ILAPAAG------------------ALFGG--------SAAAERDDDLQAGT---YRNSF 405 Query: 435 EAIRADVVWRPVLADGTGLRLHPRATARGSQSAIVVGPDGNTRANGADEIYCDRLGRVRI 494 AIR V P++ RL P TARG+Q+A+V G A+ A + DR RV++ Sbjct: 406 TAIRDSV---PMVPAAIAERLKP--TARGTQTALVTGA-----ADAA--VTTDRNHRVKV 453 Query: 495 RFHWQ----------------------GRNNDAGATCWVRVAQRAAAGGHGMQFLPRIGQ 532 +FHWQ ND+ T W+RVA+ + G QF+PR+G Sbjct: 454 QFHWQRGKSPNPGGLRETGNLDDKDGNANGNDSSGT-WIRVAEAQSGPNWGSQFIPRVGS 512 Query: 533 EVLVQFLEDDIDRPIILGALYNGQGEGAQAPTPGGEARSDAQDGSKVFASASDFAPSGQG 592 EVLV F+E DIDRP+++ LYN G+ AP F + +D + G Sbjct: 513 EVLVDFIEGDIDRPVVVAQLYN----GSDAPP---------------FPAGADSGINHAG 553 Query: 593 NVAGGNAPTWHGGSQDGDGHRNAAAQWGIRSKEFGGAGYNQLLFDDTDAQGRVQLKTSQA 652 +++G WH + D G+G+NQ + DDT +Q R++L +S A Sbjct: 554 SISG-----WHSTAHD-------------------GSGFNQWVVDDTQSQLRMRLASSTA 589 Query: 653 ATELNLGHLIHAADN--YRGSFRGTGAELRTDAYGAIRAASGILFSSY-RIVQNAGSRDP 709 ++LNLGHL+ AD RGS+RG G ELR+DA+G +R G+L S+ R + A Sbjct: 590 KSQLNLGHLVEQADTGAQRGSYRGQGFELRSDAWGVVRGGEGLLLSTTARPLNGASVTGT 649 Query: 710 AGDNAGGMALLKQAALLGKTFNEATVTHKTVALASHVGPTQANASIINDNAAPLEAIRTA 769 D AG +A LK A L +T +++ + AL+S TQA L+A +T Sbjct: 650 QMDAAGAIAQLKGAKSLAQTMSDSATQQQ--ALSS----TQA-----------LQA-KTD 691 Query: 770 AAGMVDGAPDKSGEDVAAANTQ---PSDGKLPQSTSAL-IGIAAREGLGAVAGQHLQLAN 825 ++D P G+ A+ N Q SDG + +A + A+ + + + + Sbjct: 692 FLALID--PSDQGKHPASVNGQDALKSDGSTRNTDAAQPVEKFAKAAVLMDSPSSINWTS 749 Query: 826 GETVSFLSGQDSQHVSGNQLRLRSGQALGVLAGAIAAGEGGQ-GLQMIAAQQNIDVQAQA 884 + + ++ Q + + + AG A+ G+Q AA + +QA Sbjct: 750 NASTLLYAAENLQWTTQGDVHWSAADTASAAAGKAASFYSHDGGIQAFAANGPVSLQAHT 809 Query: 885 ETLAVQARDQLSVVSANASVDWAAAKKISLSTAGGANITIEGGNITVQCPGKLTIHAAQK 944 + L + A ++V S N S++ A +KI L AG A++T+EGGNIT CPG ++ A Sbjct: 810 DALEILADKDVTVTSVNDSIEIKARQKIVLQ-AGQASVTLEGGNITFACPGTFSVKGATH 868 Query: 945 VFEGPVRNDAQLPLLPGS---ICVECLLKARAAGSPFA 979 F G L LP + + E + G+P + Sbjct: 869 AFPGGASVSPDLMALPDTKYKLFDEAFVVKDPNGTPLS 906 >gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 928 Score = 279 bits (713), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 262/939 (27%), Positives = 405/939 (43%), Gaps = 171/939 (18%) Query: 31 LLVEAFAAAEGLHGVGLREVIAL-SLDAGLPLTSLIGRQASLQVRLSDGSTSRFSGLINE 89 LL + +E L G G I L S + L LI + +L ++ + G ++ Sbjct: 46 LLPQRMVGSERL-GRGYDYTIDLVSTRDDIELKKLIAQPVTLWLQQDGSDYAPLHGYVHT 104 Query: 90 AAKLGSEGGFARYRLRLVPWIWLLGQSRNSRVWQDKTVIEIVEDVFAEYAPHAAWTWSDE 149 A +LGS+G A +++ + PW+ L +++R+WQD +I+ DVF ++A +A + E Sbjct: 105 ARRLGSDGQLASFQIGMAPWLHFLKYRKDARIWQDSKADDILADVFDQHA-YARGNYRFE 163 Query: 150 VASFMQDVPPRSYVIQYRESNLEFVSRLLAAEGLSWRVEESADAAAGHRLALFADSSVKG 209 + + PRSY QY E++ FV RL+ EG E+ D +GH L + Sbjct: 164 IVT---PALPRSYCTQY-ETDWHFVQRLMEEEGWYAYHEQKPD-GSGHVLVI-------- 210 Query: 210 AFPEDASSAAALGGTGIRFHGASAREQQDSIQALAARRTLQSATFTLLSYDDRN----KQ 265 ++ A L + FHGA +++ + I +A R L S + D ++ KQ Sbjct: 211 --TDNTDQAKPLAPEQLAFHGAGTQDEVNRILHWSASRGLASTRLATRTDDYKSPGDQKQ 268 Query: 266 AIATSLPTNHEFGHKDAP-RLESYDSPGLSAYRDTAQADRYAQLHLQASEARNKLWQGRS 324 LP H P LE Y+ G +Y DR A+L ++ E+ K + G S Sbjct: 269 TQERVLPE-----HGALPGELEVYEYSGPYSYAKQDDGDRQARLRVEQWESSMKRFMGVS 323 Query: 325 TVRTLRPGTRFSLAQGPLGLTAAAAGQPVEYALLSVFSIGVNNLPKDAEEGLAELF-GPL 383 RTL G F+L P + Q ++ L++V NNLP G A F G L Sbjct: 324 GARTLAAGRWFTLTDHP--AHRGDSKQDSQFMLIAVEWFIENNLPL---SGTARDFPGSL 378 Query: 384 PPLLEECVAACQAQQQSLYGALSPDSPPLASQLELDGVIAQARKLGYANAFEAIRADVVW 443 P L+ A+ D AR N FE R + + Sbjct: 379 KPQLDAFKASMGRSN--------------------DDAGGNARTGHCFNRFEVQRRKLPY 418 Query: 444 RPVLADGTGLRLHPRATARGSQSAIVVGPDGNTRANGADEIYCDRLGRVRIRFHWQGRN- 502 R D T +HP Q+A+VVGP G +E++ D+L RV+++F W N Sbjct: 419 RSPF-DHTKPVMHP-------QTAVVVGPQG-------EEVFTDKLNRVKVQFRWDRINP 463 Query: 503 NDAGATCWVRVAQRAAAGGHGMQFLPRIGQEVLVQFLEDDIDRPIILGALYNGQGEGAQA 562 D A+CWVRV+ A G +PR+GQE+++ FL D DRP+ G L+N + Sbjct: 464 GDEKASCWVRVSYPNAGENWGEVKVPRVGQELIISFLNGDPDRPVATGRLFNQE------ 517 Query: 563 PTPGGEARSDAQDGSKVFASASDFAPSGQGNVAGGNAPTWHGGSQDGDGHRNAAAQWGIR 622 P WH DG + G++ Sbjct: 518 -----------------------------------QPPQWH-----TDGRLS-----GLK 532 Query: 623 SKEFGGAGYNQLLFDDTDAQGRVQLKTSQAATELNLGHLIHAADNYRGSFRGTGAELRTD 682 SKEFGG G+NQL+ DDT +Q RV L +SQ+ +LNLG+L+ ADN R +F G+G L TD Sbjct: 533 SKEFGGNGFNQLVMDDTTSQNRVHLYSSQSNAQLNLGYLVSQADNERRNFYGSGFALSTD 592 Query: 683 AYGAIRAASGILFSSYRIVQNAGSRDPAG---DNAGGMALLKQAALLGKTFNEATVTHKT 739 YGA+ G+ SSY G P G D + +L+K +A L + +++ Sbjct: 593 DYGAVVTQKGLYLSSY------GRPGPQGTQLDASEATSLMKASADLARGLSDSASRAGA 646 Query: 740 VALASHVGPTQANASIINDNAAPLEAIRTAAAGMVDGAPDK-SGEDVAAANTQPSDGKLP 798 ALA + + VD DK SG+ +AN Sbjct: 647 EALA-----------------------QDSLKDFVDATEDKYSGQGQGSAN--------- 674 Query: 799 QSTSALIGIAAREGLGAVAGQHLQLANGETVSFLSGQDSQHVSGNQLRLRSGQALGVLAG 858 + L+ +AA G+G Q Q+ + + + SG+D+ SG L L + Sbjct: 675 RFKKPLLMMAAPAGIGLATDQGTQVHSAQETTLTSGKDTSIASGKSL-------LATVKE 727 Query: 859 AIAAGEGGQGLQMIAAQQNIDVQAQAETLAVQARDQLSVVSANASVDWAAAKKISLSTAG 918 I+ G+++ AA+ +++QAQ++ L + A ++S + V+ A ++ +S AG Sbjct: 728 KISLFAQNAGMKLFAAKGKVEIQAQSDDLDLIAEKVARLLSTSGRVEIHAKDEVMIS-AG 786 Query: 919 GANITIEGGNITVQCPGKLTIHAAQKVFEGPVRNDAQLP 957 G+ I I IT PGK A+ GP + +P Sbjct: 787 GSFIQINSAGITQGTPGKWEAKASLHSMPGPASQNFVMP 825 >gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 886 Score = 265 bits (677), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 267/953 (28%), Positives = 408/953 (42%), Gaps = 171/953 (17%) Query: 10 QFTSATRLYSL--SLGGEAASADLLVEAFAAAEGLHGVGLREVIALSLDAGLPLTSLIGR 67 + T RL L SLG + LL + A E L+ + L+ G+ L LI + Sbjct: 15 RITQHRRLLQLDSSLGPDI----LLPQRLVATERLNDGYEVTIDLLATHTGIALEQLIAQ 70 Query: 68 QASLQVRLSDGSTSRFSGLINEAAKLGSEGGFARYRLRLVPWIWLLGQSRNSRVWQDKTV 127 +L +R DG T G ++ A +LGS+G +L L PW+ L +++R+WQDK Sbjct: 71 PVTLWIRQHDGDTLPLHGYVHTAKRLGSDGELDFCQLSLSPWLHFLRFRKDARIWQDKRT 130 Query: 128 IEIVEDVFAEYAPHAAWTWSDEVASFMQDVP--PRSYVIQYRESNLEFVSRLLAAEGLSW 185 +I+ DVF + P A + F + P PR Y QY E++ FV RL+ EG Sbjct: 131 EDILADVFNNH-PQARGHY-----RFQLERPYTPRPYCTQY-ETDWHFVQRLMEEEGWFA 183 Query: 186 RVEESADAAAGHRLALFADSSVKGAFPEDASSAAALGGTGIRFHGASAREQQDSIQALAA 245 E+ D +GH L + ++ P+ GI FHGA+ R++ D I +A Sbjct: 184 HHEQRED-GSGHVLVITDNTWNLPGLPQQ----------GIAFHGAAPRDELDKILHWSA 232 Query: 246 RRTLQSATFTLLSYDDRN----KQAIATSLPTNHEFGHKDAPRLESYDSPGLSAYRDTAQ 301 RTL S + S D ++ K+A +P E+G A +LE Y+ G ++R Q Sbjct: 233 SRTLSSKGWRGRSDDYKSPGMKKEAEEQVMP---EYGQLPA-QLEMYEYTGAYSFRLQEQ 288 Query: 302 ADRYAQLHLQASEARNKLWQGRSTVRTLRPGTRFSLAQGPLGLTAAAAGQPVEYALLSVF 361 +R A L ++ E+ + + S VR L G F L + P A + ++ +L++ Sbjct: 289 GNRQADLQVEQWESSMQRYSAVSGVRNLACGRWFRLEEHP--QHRAEPDRERQFVILAID 346 Query: 362 SIGVNNLPKDAEEGLAELFGPLPPLLEECVAACQAQQQSLYGALSPDSPPLASQLELDGV 421 NNLP L+ P SL GAL + + Sbjct: 347 WFVENNLP------LSHQALDFP--------------GSLKGALM----AFKESIRRERQ 382 Query: 422 IAQA--RKLGYA-NAFEAIRADVVWRPVLADGTGLRLHPRATARGSQSAIVVGPDGNTRA 478 +A+ G+ N FE R + +RP A + L Q+AIVVGP Sbjct: 383 VAETDNEHTGHCFNRFEVQRRKLPFRPARAHARPVML--------PQTAIVVGP------ 428 Query: 479 NGADEIYCDRLGRVRIRFHWQGRN-NDAGATCWVRVAQRAAAGGHGMQFLPRIGQEVLVQ 537 ++E+Y D L R++++F W N + A+CWVRV+ A G +PRIGQEV+V Sbjct: 429 -ASEEVYTDHLDRIKVQFRWDRINPGNEAASCWVRVSYPNAGQYWGAIQVPRIGQEVIVS 487 Query: 538 FLEDDIDRPIILGALYNGQGEGAQAPTPGGEARSDAQDGSKVFASASDFAPSGQGNVAGG 597 FL D DRP++ G L+N + Sbjct: 488 FLNGDPDRPVVTGRLFNAE----------------------------------------- 506 Query: 598 NAPTWHGGSQDGDGHRNAAAQWGIRSKEFGGAGYNQLLFDDTDAQGRVQLKTSQAATELN 657 P WH + G++SKEFGG G+NQ++ DDT Q R+ L ++ +LN Sbjct: 507 QRPQWHTNGRLS----------GVKSKEFGGTGFNQMVMDDTPEQNRIHLYSTNTHAQLN 556 Query: 658 LGHLIHAADNYRGSFRGTGAELRTDAYGAIRAASGILFSSYRIVQNAGSRDPAGDNAGGM 717 LGHL+ N R SF G+G L TDAYGAI G+ S+Y G++ A + G Sbjct: 557 LGHLVSQTGNERRSFFGSGFALSTDAYGAIVTHKGLYISTYGRPGAQGTQLDAREATGQ- 615 Query: 718 ALLKQAALLGKTFNEATVTHKTVALASHVGPTQANASIINDNAAPLEAIRTAAAGMVDGA 777 LK A L +T +E T A A A PL A + A +D Sbjct: 616 --LKSGANLSRTLSE----------------TAAKA-----GAEPL-AGQEALRDFIDA- 650 Query: 778 PDKSGEDVAAANTQPSDGKLPQSTSALIGIAAREGLGAVAGQHLQLANGETVSFLSGQDS 837 A PS + + A++ A+ +G+G + + G ++ SG D+ Sbjct: 651 -------TQADYEDPSQAQANRFQQAILLAASPDGIGLTTPKGVHTHAGGEITLSSGADT 703 Query: 838 QHVSGNQLRLRSGQALGVLAGAIAAGEGGQGLQMIAAQQNIDVQAQAETLAVQARDQLSV 897 G L L +A I+ G+++ +A+ ++VQAQ++ L + A + Sbjct: 704 SIAVGKSL-------LASVAEKISLFAFKAGIKLFSAKGKVEVQAQSDDLELIAEKVARL 756 Query: 898 VSANASVDWAAAKKISLSTAGGANITIEGGNITVQCPGKLTIHAAQKVFEGPV 950 +SA+ V+ A +++ L TAGG+ I + IT G A GP Sbjct: 757 LSASGRVEIRAKEEV-LITAGGSFIRLNASGITQGTSGAWEAKAGTHAMPGPT 808 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.131 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,137,555 Number of extensions: 141569 Number of successful extensions: 586 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 534 Number of HSP's successfully gapped: 19 Length of query: 981 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 887 Effective length of database: 1,174,780 Effective search space: 1042029860 Effective search space used: 1042029860 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 135 (56.6 bits)