BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3909.p
         (302 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310099|ref|YP_003774191.1| hypothetical protein Hsero_0764...    70   3e-13

>gi|300310099|ref|YP_003774191.1| hypothetical protein Hsero_0764
           [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 106/234 (45%), Gaps = 7/234 (2%)

Query: 30  YVLLDPSGLPELPARLRRHPRPASNLFRLEGQLSAQAVSPLLLPWQPSAESGTWRDLEHW 89
           Y+LLD +       +L+    P ++LF  + + +   ++PLL+      ++     L  W
Sbjct: 26  YLLLDSAQAEGSHLKLQAMRLPYASLFDGKREEALPEIAPLLISLS-GLDAPRRERLASW 84

Query: 90  IVDVASTSASVLWISSPLSREVLAKRLAQRVNALLPDSLEVVLRFFDTRVFEALVQLLAP 149
           I  +A ++  + W  SPL  +  A  L       L D   +++R++DTR+     Q L P
Sbjct: 85  ISQLAFSAPCLSWYESPLPLQAFAAHLRNFHQVGLSDGQAMMMRWYDTRILPIWAQALTP 144

Query: 150 PIRAHFLSPATQWAFVGRRGE--MIRIASEFA---INEPLEQPLL-LDAATESALIDASE 203
             R+ F       A+V R GE   I  ASE        PL+QPL+ LD      L+DA +
Sbjct: 145 EQRSLFTGGMFSIAYVDRFGEAKTIHQASEAGPPSAPPPLDQPLVTLDDQQFGLLVDAGD 204

Query: 204 PDQIADMLGKTVPDAYLGLPFEERYDFILRHRQHARTLGIESSFDLSLYCALAL 257
            D + + L   +PD    L      DF+ +++Q A   G++     + Y  LAL
Sbjct: 205 LDTLVNHLKFVIPDETRKLAPRTLLDFVAKYQQEAVAAGLDDIDRQAQYVLLAL 258


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 843,121
Number of extensions: 32197
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 217
Effective length of database: 1,217,395
Effective search space: 264174715
Effective search space used: 264174715
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)