BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3907.p
         (668 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310103|ref|YP_003774195.1| hypothetical protein Hsero_0768...   132   8e-32

>gi|300310103|ref|YP_003774195.1| hypothetical protein Hsero_0768
           [Herbaspirillum seropedicae SmR1]
          Length = 720

 Score =  132 bits (332), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 102/288 (35%), Positives = 133/288 (46%), Gaps = 67/288 (23%)

Query: 164 LARAANPSN-AIDEINVAVFGFSRGATEARAFIRDFIKQKCSQSGNSLKLKNGGWPVRIR 222
           LA A   S   + +INV+VFGFSRGA EARA    ++ +  + SG + +L   G P+RI 
Sbjct: 212 LATAVKSSQRKVVQINVSVFGFSRGAAEARACCH-WLHELFTPSGGAFEL--AGIPIRIG 268

Query: 223 FMGLFDTVASVGLPMSANNAAFVRNDRLTVGNVLRRSMQAIPATLRAVDLAFGEPGADPS 282
           F+G+FDTVA+VG                 +G+V        P T                
Sbjct: 269 FLGVFDTVAAVG-----------------IGDV-------TPVTF--------------- 289

Query: 283 PGTADGHSAWADDLR-IPAAVELCVHFIAAHEIRNSFPVDSVFYKGQRPANCREMIYPGV 341
                GH AWAD  + +P AVE C HF+A HE R SFP++S             + YPG+
Sbjct: 290 -----GHMAWADKTQSVPPAVEQCAHFVALHEQRASFPLES-------STGWTNVGYPGM 337

Query: 342 HSDVGGGYRPGEEGKSGLAKSRKSGPSQ-SSLMISQFPLRGMYDQALAAGVPLRPQSAWK 400
           HSD+GGGY PGE+G        KS PS   S  +SQ PL  M+  AL AGVPL       
Sbjct: 338 HSDIGGGYFPGEQG--------KSMPSWGKSPHLSQIPLIDMHFTALKAGVPLWTTGEIN 389

Query: 401 --PETKEDFDLDPDLMQLLKHYLDTAGWGGIPMGLLINKHMSLYFAWR 446
             P     +  DP L++    +L T G     +      H   Y  WR
Sbjct: 390 ADPSLSASYATDPRLIKSYNDWLATNGIKAGSIREYTEAHTRQYLRWR 437



 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 55/99 (55%), Gaps = 12/99 (12%)

Query: 69  CRQKLWISIFFDGTGNN----MDADVPT----NEHSNVVRLYRAAWEDAPAVGRYRIYVP 120
           C+ +L+  +FFDGTGNN     D         N+HSNV RL+  A+ D P  G +R+Y+ 
Sbjct: 41  CKGQLFTGLFFDGTGNNDKWVEDGQTKNQRQRNKHSNVARLF-DAYIDDPDNGFFRVYMQ 99

Query: 121 GIGTYFKEIGDN---GGSMTGLGMGAMGQARLGWAAKTL 156
           G+GT F EIGD    G  + G G G MG  R+ W   +L
Sbjct: 100 GVGTPFAEIGDTFKLGTDIGGSGFGYMGADRINWGITSL 138


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,188,272
Number of extensions: 96515
Number of successful extensions: 285
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 3
Length of query: 668
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 576
Effective length of database: 1,184,250
Effective search space: 682128000
Effective search space used: 682128000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 134 (56.2 bits)