BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3906.p (507 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313306|ref|YP_003777398.1| methyl-accepting chemotaxis pro... 815 0.0 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 404 e-114 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 385 e-108 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 383 e-107 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 379 e-106 >gi|300313306|ref|YP_003777398.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 507 Score = 815 bits (2106), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/507 (83%), Positives = 470/507 (92%) Query: 1 MKIGIRLGGSFMLLTLLACVLIIASILTLTRIGQHWDNFSGTVLNKQDYATQGYIKLGES 60 MKIG RLGGSFML+TLL C LI+AS LTLT+IG+HW++FSGTVL KQDYATQGYIKLG+ Sbjct: 1 MKIGTRLGGSFMLVTLLTCALIVASTLTLTQIGRHWNDFSGTVLGKQDYATQGYIKLGDG 60 Query: 61 VHNFKNYILRGKDYDQQFLADMDAIANLVAQYRKLGVDDPKEEALLQKISSGERNYRQAL 120 V NFKNY++RGKDYD+ FLADMDAI L+ QYRKLGVD+PKEEALL+KIS+GER YR+AL Sbjct: 61 VQNFKNYVVRGKDYDRHFLADMDAIVRLMEQYRKLGVDNPKEEALLEKISNGERRYREAL 120 Query: 121 AKVQSLKAAGTSITDIDASISGADKILGAGFAGLLAIAHENTNGTGQKISAAISAGKSIE 180 AK Q++KAAG S +++DA+ISGADK+LGAGF+GLLAIA EN TG++IS+AI AGKS+ Sbjct: 121 AKAQAMKAAGASPSEVDAAISGADKVLGAGFSGLLAIARENAGSTGEQISSAIGAGKSLS 180 Query: 181 LGVGVLVVVLAAALATLATRSITRPVREAVQIAKTVAAGDLGSRIEVTRKDETGELLQAL 240 L VG LVV+LA LA LATRSIT+P+REAV+IAKTVAAGDLGSRI VTRKDETGELLQAL Sbjct: 181 LAVGALVVILALVLAVLATRSITQPMREAVRIAKTVAAGDLGSRIVVTRKDETGELLQAL 240 Query: 241 KDMNSSLQRVVGGVRTGSDTIVTASTQIAGGNLDLSARTEQQASSLEETAAAMEQITSTV 300 K+MN+SLQ+VVGGVR GSDTIVTASTQIAGGNLDLSARTE+QASSLE+TAAAME+ITSTV Sbjct: 241 KEMNASLQKVVGGVREGSDTIVTASTQIAGGNLDLSARTEEQASSLEQTAAAMEEITSTV 300 Query: 301 RRNADHARQANAMAGSVSEVASRSGLVVSDVVSTMDEIQASAREIAEIISVIDGIAFQTN 360 RRNADHARQANAMAGSVSEVASRSGLVVSDVV TMDEIQASAREI EIISVIDGIAFQTN Sbjct: 301 RRNADHARQANAMAGSVSEVASRSGLVVSDVVGTMDEIQASAREIEEIISVIDGIAFQTN 360 Query: 361 ILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAKEIKDLIGNSVEKVETGSKLVK 420 ILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSATAAKEIKDLIGNSVEK+ GSKLV+ Sbjct: 361 ILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSATAAKEIKDLIGNSVEKIAAGSKLVQ 420 Query: 421 DAGATIEELVMNVRNVTQIMSEISAASGEQEAGIEQVNQAIVQMDTVTQQNAALVEEAAA 480 AGATIEELV +VR+VTQIMSEISAASGEQE+GIEQVNQAI QMDTVTQQNAALVEEAAA Sbjct: 421 AAGATIEELVRSVRDVTQIMSEISAASGEQESGIEQVNQAIAQMDTVTQQNAALVEEAAA 480 Query: 481 ATEALKEQARRLAESVSVFRLGVGRMA 507 ATEALK QARRLAESVSVFRLG G+MA Sbjct: 481 ATEALKAQARRLAESVSVFRLGGGQMA 507 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 404 bits (1039), Expect = e-114, Method: Compositional matrix adjust. Identities = 255/510 (50%), Positives = 345/510 (67%), Gaps = 11/510 (2%) Query: 1 MKIGIRLGGSFMLLTLLACVLIIASILTLTRIGQHWDNFSGTVLNKQDYATQGYIKLGES 60 +KIG+RL F+ L +L V++ + L IG D+ + L K+ A Q + + E+ Sbjct: 4 LKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAIKEN 63 Query: 61 -VHNFKNYILRGKD--YDQQFLADMDAIANLVAQYRK---LGVDDPKEEALLQKISSGER 114 V F +++ D + F +DA + ++Q +K + D +E+ L ++ Sbjct: 64 GVRTFA--VMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKLRA 121 Query: 115 NYRQALAKVQSLKAAGTSITDIDASISGADKILGAGFAGLLAIA---HENTNGTGQKISA 171 YR + +K AG + + + K++ G+L A + + T I+ Sbjct: 122 AYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAINR 181 Query: 172 AISAGKSIELGVGVLVVVLAAALATLATRSITRPVREAVQIAKTVAAGDLGSRIEVTRKD 231 +G+S+ L +G + +VL AALA L TRSITRP+ +AV IA+TVAAGDL SRI+ + +D Sbjct: 182 DYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSSRD 241 Query: 232 ETGELLQALKDMNSSLQRVVGGVRTGSDTIVTASTQIAGGNLDLSARTEQQASSLEETAA 291 ETG+LL ALK MN +L +VG VR G++TI TAS +IA GNLDLSARTE QA SLEETA+ Sbjct: 242 ETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEETAS 301 Query: 292 AMEQITSTVRRNADHARQANAMAGSVSEVASRSGLVVSDVVSTMDEIQASAREIAEIISV 351 AMEQ+TSTV++NAD+ARQAN +A S S+VA++ G VV VV+TM I AS+++IA+II V Sbjct: 302 AMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIADIIGV 361 Query: 352 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAKEIKDLIGNSVEK 411 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LI +SVEK Sbjct: 362 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVEK 421 Query: 412 VETGSKLVKDAGATIEELVMNVRNVTQIMSEISAASGEQEAGIEQVNQAIVQMDTVTQQN 471 V+ GS+LV AG T++E+V +V VT ++ EI+ AS EQ GIEQVN AI +D TQQN Sbjct: 422 VDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHIDETTQQN 481 Query: 472 AALVEEAAAATEALKEQARRLAESVSVFRL 501 AALVE+AAAA ++++QA L ++VSVFRL Sbjct: 482 AALVEQAAAAARSMQDQAASLTDAVSVFRL 511 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 385 bits (990), Expect = e-108, Method: Compositional matrix adjust. Identities = 259/510 (50%), Positives = 343/510 (67%), Gaps = 9/510 (1%) Query: 1 MKIGIRLGGSFMLLTLLACVLIIASILTLTRIGQHWDNFSGTVLNKQDYATQGYIKLGES 60 MKI +RLG F L ++ CV+ + L + D K TQ K+ Sbjct: 7 MKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITDKVNTG 66 Query: 61 VHNFKNYIL-RGKDYDQQFLADMDAIANLVAQY---RKLGVDDPKEEALLQKISSGERNY 116 + +N I+ R + +++L MD + V+++ + + P+ LL + +Y Sbjct: 67 ARSLRNAIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQARADY 126 Query: 117 RQALAKVQSL----KAAGTSITDIDASISGADKILGAGFAGLLAIAHENTNGTGQKISAA 172 + KV L K + D +I DK A +++ + + ++ SAA Sbjct: 127 SKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAA-VKEMVSFQSSLMDKSAERASAA 185 Query: 173 ISAGKSIELGVGVLVVVLAAALATLATRSITRPVREAVQIAKTVAAGDLGSRIEVTRKDE 232 S+ +I L + + V+L+A A L TRSITRP+ EAVQ+A VAAGDL +IE T KDE Sbjct: 186 SSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIEATSKDE 245 Query: 233 TGELLQALKDMNSSLQRVVGGVRTGSDTIVTASTQIAGGNLDLSARTEQQASSLEETAAA 292 TG LL ALK MN +L R+V VR G+DTI TAS +IA GNLDLS+RTEQQA +LEETA+A Sbjct: 246 TGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGALEETASA 305 Query: 293 MEQITSTVRRNADHARQANAMAGSVSEVASRSGLVVSDVVSTMDEIQASAREIAEIISVI 352 ME++TSTVR+NAD+ARQAN +A + S+VA + G VV +VV TM +I ++R+I +IISVI Sbjct: 306 MEELTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRKIVDIISVI 365 Query: 353 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAKEIKDLIGNSVEKV 412 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA AAKEIK LI SVE+V Sbjct: 366 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDASVERV 425 Query: 413 ETGSKLVKDAGATIEELVMNVRNVTQIMSEISAASGEQEAGIEQVNQAIVQMDTVTQQNA 472 E+GS+LV AGAT+EE+V +V+ VT +++EI+AASGEQ GIEQ+NQAIVQMD VTQQNA Sbjct: 426 ESGSRLVGQAGATMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVTQQNA 485 Query: 473 ALVEEAAAATEALKEQARRLAESVSVFRLG 502 ALVE+AAAA ++L+EQ+ RL+++V +FRLG Sbjct: 486 ALVEQAAAAAQSLQEQSGRLSDTVGIFRLG 515 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 383 bits (984), Expect = e-107, Method: Compositional matrix adjust. Identities = 254/530 (47%), Positives = 346/530 (65%), Gaps = 40/530 (7%) Query: 1 MKIGIRLGGSFMLLTLLACVLIIASILTLTRIGQHWDNFSGTVLNKQDYATQGYIK-LGE 59 +KIG RL F L+ + +L+ + R+G + LN Y + ++ + E Sbjct: 6 LKIGTRLYMGFGLVAAILVILVSVAYTNFARLG------AANELNVHTYEVRAQLRAMAE 59 Query: 60 SVHNF----KNYILRGKDYD-QQFLADMDAIANLVAQYRKLGVDDPKEEALLQKISSGER 114 S+ N + + L G D + + M + + R L D+ ++ LQ++S E+ Sbjct: 60 SLINIETGQRGFSLSGIDASLEPYHLGMTTFKTALEKTRTLTSDNTLQQQRLQELSDSEQ 119 Query: 115 NY------------------RQALAKVQSLKAAGTSITDIDASISGADKILGAGFAGLLA 156 + R+ +A V + + AG + +D+ D + A L Sbjct: 120 RWLKSAIDPAIELRRAVREGREQMAAVVAFEQAGKGKSQMDSMRVLLDDLDRTESALLGE 179 Query: 157 IAHENTNGTGQKISAAISAGKSIEL-GVGVLVVVLAAALATLATRSITRPVREAVQIAKT 215 A E +AA+ + S L G G + ++LA LA +ITRP+ AVQ+A+ Sbjct: 180 RAEE---------AAALRSVTSTTLIGGGAIALMLAVLLAWWLANNITRPLALAVQLARR 230 Query: 216 VAAGDLGSRIEVTRKDETGELLQALKDMNSSLQRVVGGVRTGSDTIVTASTQIAGGNLDL 275 VA+GDL +RIEV +DETG LL ALKDMN SL R+V GVR G++ I TAS++IA GNLDL Sbjct: 231 VASGDLTARIEVRSRDETGALLGALKDMNESLVRIVSGVRRGTEMIATASSEIATGNLDL 290 Query: 276 SARTEQQASSLEETAAAMEQITSTVRRNADHARQANAMAGSVSEVASRSGLVVSDVVSTM 335 S+RTEQQASSLEETA++ME++TSTV++N +AR+AN MA + S++AS G VV+ VV TM Sbjct: 291 SSRTEQQASSLEETASSMEELTSTVQQNTANAREANRMAQAASDIASSGGGVVARVVDTM 350 Query: 336 DEIQASAREIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSA 395 +EI S+R+I +IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA Sbjct: 351 EEINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA 410 Query: 396 TAAKEIKDLIGNSVEKVETGSKLVKDAGATIEELVMNVRNVTQIMSEISAASGEQEAGIE 455 AAKEIK LI +SV KVE+GS LV +AG T+ E+V +V+ VT +++EISAA EQ +GIE Sbjct: 411 AAAKEIKALISDSVAKVESGSLLVNEAGDTMREIVESVQRVTNMINEISAAGEEQRSGIE 470 Query: 456 QVNQAIVQMDTVTQQNAALVEEAAAATEALKEQARRLAESVSVFRLGVGR 505 QV+QA+ QMD VTQQNAALVE+AAAA+++L+EQA+ LA++VSVFRL G+ Sbjct: 471 QVSQAVGQMDQVTQQNAALVEQAAAASQSLQEQAQELAQAVSVFRLEAGQ 520 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 379 bits (972), Expect = e-106, Method: Compositional matrix adjust. Identities = 252/519 (48%), Positives = 330/519 (63%), Gaps = 29/519 (5%) Query: 1 MKIGIRLGGSFMLLTLLACVLIIASILTLTRIGQHWDNFSGTVLNKQDYATQGYIKLGES 60 M IG RL F L+ + ++ + L + Q L + Y L Sbjct: 7 MNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWYTNL--- 63 Query: 61 VHNFKNYILRGKDYDQ----QFLADMDAIANLVAQYRK---LGVDDPKEEALLQKISSGE 113 V + I K D F A++ A + +Y+K + P+E+AL QKI Sbjct: 64 VAGIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIGELR 123 Query: 114 RNYRQALAKVQSLKAAGTSITDIDASISGADKILGAGFAG-----------LLAIAHENT 162 + Y + ++ KAAG + A +IL F L+ + Sbjct: 124 KLYLSSRDEINKAKAAGNT--------EEAMRILDQVFVPNATAYQDTMRKLVDFQRKEM 175 Query: 163 NGTGQKISAAISAGKSIELGVGVLVVVLAAALATLATRSITRPVREAVQIAKTVAAGDLG 222 + T ++I A + +++ L + L+++L A T IT+P+ AV +++ VA GDL Sbjct: 176 DDTAREIDAIAAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLS 235 Query: 223 SRIEVTRKDETGELLQALKDMNSSLQRVVGGVRTGSDTIVTASTQIAGGNLDLSARTEQQ 282 S I VT +DETG+LLQ+LKDMN SL+ +V VR+G+DTI TAS++IA GNLDLS+RTEQQ Sbjct: 236 SEIAVTSRDETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNLDLSSRTEQQ 295 Query: 283 ASSLEETAAAMEQITSTVRRNADHARQANAMAGSVSEVASRSGLVVSDVVSTMDEIQASA 342 ASSL ETA+AME++ STVR+NAD+ARQA+ +A S S VA + G VVS VV TM I AS+ Sbjct: 296 ASSLAETASAMEELISTVRQNADNARQASQLANSASAVAEQGGGVVSQVVDTMGAINASS 355 Query: 343 REIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAKEIK 402 R+I +IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEIK Sbjct: 356 RKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIK 415 Query: 403 DLIGNSVEKVETGSKLVKDAGATIEELVMNVRNVTQIMSEISAASGEQEAGIEQVNQAIV 462 +LI +SV KV+ GS+LV+ AG T++E+V +VR VT I++EISAAS EQ GIEQ+N AI Sbjct: 416 ELINDSVGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAIT 475 Query: 463 QMDTVTQQNAALVEEAAAATEALKEQARRLAESVSVFRL 501 QMD VTQQNAALVEEAAAA +++ QA RL + VSVFRL Sbjct: 476 QMDQVTQQNAALVEEAAAAAASMQTQAGRLMQMVSVFRL 514 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.127 0.326 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,096,408 Number of extensions: 36536 Number of successful extensions: 529 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 303 Number of HSP's successfully gapped: 71 Length of query: 507 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 418 Effective length of database: 1,198,455 Effective search space: 500954190 Effective search space used: 500954190 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)