BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3904.p (591 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313303|ref|YP_003777395.1| acyl-CoA dehydrogenase [Herbasp... 1031 0.0 gi|300309596|ref|YP_003773688.1| acyl-CoA dehydrogenase [Herbasp... 527 e-150 gi|300310835|ref|YP_003774927.1| acyl-CoA dehydrogenase [Herbasp... 385 e-108 gi|300310260|ref|YP_003774352.1| acyl-CoA dehydrogenase [Herbasp... 138 1e-33 gi|300311865|ref|YP_003775957.1| acyl-CoA dehydrogenase [Herbasp... 131 2e-31 >gi|300313303|ref|YP_003777395.1| acyl-CoA dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 591 Score = 1031 bits (2667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 511/590 (86%), Positives = 542/590 (91%) Query: 1 MTMSYTPPLREFAFVLDEVLQAPQVLRALPAHAELDGELMMQVLEEAGRFAANVVAPLNA 60 MTM Y PPLR+FAFVLDEVLQAPQVLRALPAHAE+DG+LMMQVLEEAGRFAA+VVAPLN Sbjct: 1 MTMHYAPPLRDFAFVLDEVLQAPQVLRALPAHAEIDGDLMMQVLEEAGRFAADVVAPLNG 60 Query: 61 IGDREGCRLEHGAVSTPPGFVRAYAQFCEGGWPALACAPEHGGQGLPHVLDCALYEMLSA 120 IGDREGCR ++G V+TPPGF RAYAQFC GGWPALACAPEHGGQGLPHVLDCALYEMLSA Sbjct: 61 IGDREGCRFKNGTVTTPPGFERAYAQFCAGGWPALACAPEHGGQGLPHVLDCALYEMLSA 120 Query: 121 ANHGWTMYPGLLHGAYACLATHGSPQLQARYLEQIASGQWLATMCLTEAQAGSDLGQLRT 180 ANHGWTMYPGLLHGAYACLA HGS LQARYL++IASG+WLATMCLTEAQAGSDLGQLRT Sbjct: 121 ANHGWTMYPGLLHGAYACLAAHGSAALQARYLDKIASGEWLATMCLTEAQAGSDLGQLRT 180 Query: 181 RAVPQEDGSYRITGDKIFISGGEHDLTDNIVHLVLARLPDALPGSKGLSLLLAPRVLPDG 240 RAVPQ+DGSYR++GDKIFISGGEHDLT NIVHLVLARLPDA GSKGLSL LAPRVL DG Sbjct: 181 RAVPQDDGSYRLSGDKIFISGGEHDLTPNIVHLVLARLPDAPAGSKGLSLFLAPRVLDDG 240 Query: 241 SRNGIHCTGIEHKMGIHGSATCSLHFEQAQAWLVGEPGRGLAAMFVMMNAARLHVGAQGL 300 SRNG+HCTGIEHKMGIHGSATCSLHFEQAQAWLVGE GRGLAAMFVMMNAARLHVGAQGL Sbjct: 241 SRNGVHCTGIEHKMGIHGSATCSLHFEQAQAWLVGEAGRGLAAMFVMMNAARLHVGAQGL 300 Query: 301 GLAEAAWQRASAYARERRQSRAPGGTGTDLIVRHPAVQKLLMEQRCRIEGARMLTCWAGL 360 GLAEAA+QRASAYARERRQSRAPG +G DLIV HPAVQKLLMEQRCRIEGAR+LTCWAGL Sbjct: 301 GLAEAAYQRASAYARERRQSRAPGSSGNDLIVHHPAVQKLLMEQRCRIEGARLLTCWAGL 360 Query: 361 LLDLAEHDTDAAMRRVHHERLELITPVIKAFLTDQGFQCASRALQVFGGHGYVVETGIEQ 420 LLDLAEHD +AA+R HHERLE ITPVIKAFLTDQGFQCASRALQVFGGHGYVVETGIEQ Sbjct: 361 LLDLAEHDPEAALRSRHHERLEFITPVIKAFLTDQGFQCASRALQVFGGHGYVVETGIEQ 420 Query: 421 FMRDARITMIYEGSNEIQAIDFLLRKALADDRRRLHDFLALVSADAEDVSVLGDQARLLK 480 FMRDARITMIYEG+NEIQAIDFL+RK L D+ RRL DFL LV AD + S LG+QARLL Sbjct: 421 FMRDARITMIYEGTNEIQAIDFLMRKVLGDEGRRLDDFLGLVRADIAEASGLGEQARLLG 480 Query: 481 NAVDKLKDYAQRIAQQAAQEPTLPYFLADEMLRLTGHVALGWMWLRAGRRALSALAADPR 540 AVDKL+ +A RIA AAQ P LPY++ADEMLRL GHVALGWMWLRAGRRALSA+A DP Sbjct: 481 EAVDKLRIFASRIAAAAAQAPALPYYVADEMLRLCGHVALGWMWLRAGRRALSAMAQDPL 540 Query: 541 YYGSKRDTACYHFAFIFAEVHQLSSVIEGCLATGLPPLPTDLDHHAAQEA 590 +YG KRD ACYHFAF+FAEV QLSSVIE CLATGLPPLPTDLDHHAAQEA Sbjct: 541 WYGGKRDAACYHFAFVFAEVQQLSSVIEACLATGLPPLPTDLDHHAAQEA 590 >gi|300309596|ref|YP_003773688.1| acyl-CoA dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 596 Score = 527 bits (1357), Expect = e-150, Method: Compositional matrix adjust. Identities = 272/584 (46%), Positives = 367/584 (62%), Gaps = 35/584 (5%) Query: 5 YTPPLREFAFVLDEVLQAPQVLRALPAHAELDGELMMQVLEEAGRFAANVVAPLNAIGDR 64 Y PLR+ FVL E+L +V + LP HA+ + EL+ QVLEE G+FA+ V+ PLN GDR Sbjct: 4 YNAPLRDMQFVLHELLNVEEVFKELPPHADTNRELVDQVLEEGGKFASQVLFPLNHSGDR 63 Query: 65 EGCRL--EHGAVSTPPGFVRAYAQFCEGGWPALACAPEHGGQGLPHVLDCALYEMLSAAN 122 EGC E V+TP GF +AY Q+ E GW AL+C PE GGQGLP ++ + YEML+++N Sbjct: 64 EGCHYDRESKTVTTPKGFKQAYQQYVEAGWAALSCDPEFGGQGLPLTINNSFYEMLNSSN 123 Query: 123 HGWTMYPGLLHGAYACLATHGSPQLQARYLEQIASGQWLATMCLTEAQAGSDLGQLRTRA 182 WTMYPGL HGAY CL HGS + + YL ++ SG+W TMCLTEA G+DLG LR++A Sbjct: 124 QAWTMYPGLSHGAYECLHAHGSEEQKQLYLPKLVSGEWTGTMCLTEAHCGTDLGLLRSKA 183 Query: 183 VPQEDGSYRITGDKIFISGGEHDLTDNIVHLVLARLPDALPGSKGLSLLLAPRVLPD--- 239 PQ DGSY+ITG+KIFIS GE+D++ NI+HLVLARLPDA GSKG+SL L P+ LP+ Sbjct: 184 EPQADGSYKITGNKIFISAGENDVSANIIHLVLARLPDAPEGSKGISLFLVPKFLPNADG 243 Query: 240 --GSRNGIHCTGIEHKMGIHGSATCSLHFEQAQAWLVGEPGRGLAAMFVMMNAARLHVGA 297 G+RN I C IE KMGIHG+ATC ++ + A WL+G+P +GL AMFV MNAARL VG Sbjct: 244 SLGARNPIFCGAIEEKMGIHGNATCQMNLDGATGWLIGQPHKGLQAMFVFMNAARLGVGM 303 Query: 298 QGLGLAEAAWQRASAYARERRQSRAPGGTG-----TDLIVRHPAVQKLLMEQRCRIEGAR 352 QGLGL E A+Q A YA++R Q R+ G D I+ HP V+++L+ + EG R Sbjct: 304 QGLGLTEVAYQNALVYAKDRLQMRSLSGIKAADKPADPIIVHPDVRRMLLTAKAFAEGGR 363 Query: 353 MLTCWAGLLLDLAEHDTDAAMRRVHHERLELITPVIKAFLTDQGFQCASRALQVFGGHGY 412 T + L LD D +R+ + + L+TPV+KAFLTD + S LQV+GGHGY Sbjct: 364 AFTSYVALELDKELTHPDEQVRKDSADIVALLTPVVKAFLTDNAWMATSECLQVYGGHGY 423 Query: 413 VVETGIEQFMRDARITMIYEGSNEIQAIDFLLRKALADDRRRLHDFLALVSADAED---- 468 + E G+EQ++RDARI MIYEG+N IQ++D L RK L D+ +L F A + A E+ Sbjct: 424 IAEWGMEQYVRDARINMIYEGTNTIQSLDLLGRKILMDNGAKLKKFGAQIQAFVEEHGTD 483 Query: 469 ---------VSVLGDQARLLKNAVDKLKDYAQRIAQQAAQEPTLPYFLADEMLRLTGHVA 519 ++ +GD+ L + +K +A Q A +PY LR+ GH+ Sbjct: 484 ESMSEFITPLADIGDKVTKLTMEIG-MKSFAN---QDEAGAAAVPY------LRVVGHLV 533 Query: 520 LGWMWLRAGRRALSALAADPRYYGSKRDTACYHFAFIFAEVHQL 563 +++ R + AL + +Y +K TA ++FA + E L Sbjct: 534 FSYLFARMAKIALEKQDSGDSFYAAKLATARFYFARLLPETAML 577 >gi|300310835|ref|YP_003774927.1| acyl-CoA dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 594 Score = 385 bits (988), Expect = e-108, Method: Compositional matrix adjust. Identities = 230/568 (40%), Positives = 313/568 (55%), Gaps = 22/568 (3%) Query: 3 MSYTPPLREFAFVLDEVLQAPQVLRALPAHAELDGELMMQVLEEAGRFAANVVAPLNAIG 62 MSYT P+++ FV++E L + ALP + E +LEE +F + VVAPLN Sbjct: 1 MSYTAPVKDMLFVMNE-LAGLAAVNALPGCEDATPETAEAILEENAKFCSEVVAPLNHSA 59 Query: 63 DREGCRLEHGAVSTPPGFVRAYAQFCEGGWPALACAPEHGGQGLPHVLDCALYEMLSAAN 122 D+E G V+T PGF A+ QF E GW + E GGQGLP +L EML++AN Sbjct: 60 DKEPSSWADGKVTTSPGFKEAFRQFGEAGWQGVQHPVEFGGQGLPKLLATPCIEMLNSAN 119 Query: 123 HGWTMYPGLLHGAYACLATHGSPQLQARYLEQIASGQWLATMCLTEAQAGSDLGQLRTRA 182 + + P L G L T G+ Q + ++ SG+W TM LTE QAGSDL +RTRA Sbjct: 120 LSFALCPLLTDGTIEALMTAGTQQQKETFIANFISGKWTGTMNLTEPQAGSDLALVRTRA 179 Query: 183 VPQEDGSYRITGDKIFISGGEHDLTDNIVHLVLARLPDALPGSKGLSLLLAPRVLPD--- 239 VP+ DG+Y++ G KIFI+ GEHD+ +NIVHLVLAR P+A G KG+SL + P+ L + Sbjct: 180 VPEGDGTYKLFGTKIFITYGEHDMAENIVHLVLARTPNAPEGVKGISLFIVPKFLVNADG 239 Query: 240 --GSRNGIHCTGIEHKMGIHGSATCSLHFEQ---AQAWLVGEPGRGLAAMFVMMNAARLH 294 G+RN +HC IEHK+GI S T L F A LVGE RGL MF+MMNAAR Sbjct: 240 SLGARNDVHCVSIEHKLGIKASPTAVLQFGDHGGAIGTLVGEENRGLEYMFIMMNAARFA 299 Query: 295 VGAQGLGLAEAAWQRASAYARERRQSRAPGGT-GTDLIVRHPAVQKLLMEQRCRIEGARM 353 VG QGL ++E A+Q+A AYAR+R QSR G+ G I+ P V+++LM R +IE AR Sbjct: 300 VGIQGLSVSERAYQKAVAYARDRIQSRDLAGSPGPVAIIHQPDVRRMLMSMRAQIEAARA 359 Query: 354 LTCWAGLLLDLAEHDTDAAMRRVHHERLELITPVIKAFLTDQGFQCASRALQVFGGHGYV 413 L+ A D A D A R+ + E + P++K ++T+ S +QV GG G++ Sbjct: 360 LSYVAAATSDAAHFSDDEATRKSNQAFYEYLVPIVKGWITEMSIDVTSTGVQVHGGMGFI 419 Query: 414 VETGIEQFMRDARITMIYEGSNEIQAIDFLLRKALADDRRRLHDFLALVSADAEDVSVLG 473 ETG Q+ RDARI IYEG+ IQA D + RK D LA V + VS L Sbjct: 420 EETGAAQYYRDARILPIYEGTTAIQANDLVGRKTARDGGAVAKGILAQVR---KTVSELQ 476 Query: 474 DQARL------LKNAVDKLKDYAQRIAQQAAQEPTLPYFLADEMLRLTGHVALGWMWLRA 527 A+L L A D L+ + + + + L++ G V GW RA Sbjct: 477 GDAQLQPIAARLGEAADALEQVVDYVVANVKSDIKAVFAGSVPYLKMAGVVLGGWQMARA 536 Query: 528 GRRALSALAA---DPRYYGSKRDTACYH 552 + + L A D ++Y +K TA ++ Sbjct: 537 AAVSAAKLKAGEGDGKFYEAKLATARFY 564 >gi|300310260|ref|YP_003774352.1| acyl-CoA dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 382 Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 116/364 (31%), Positives = 175/364 (48%), Gaps = 44/364 (12%) Query: 97 CAPEH-GGQGLPHV-LDCALYEMLSAANHGWTMYPGLLHGAYACLAT--HGSPQLQARYL 152 C PE GG G+ ++ L AL E+ AA G T + + AC T +GSP + ++L Sbjct: 52 CVPEQWGGAGMDYMSLVLALEEI--AAGDGATSTIVSVQNSLACGITEKYGSPTQKEQWL 109 Query: 153 EQIASGQWLATMCLTEAQAGSDLGQLRTRAVPQEDGS-YRITGDKIFISGGEHDLTDNIV 211 + +A G+ L CLTE GSD +RTRA + DG + + G K FI+ G+H V Sbjct: 110 KPLARGEMLGCFCLTEPHTGSDAAAIRTRA--ERDGDDFILNGTKQFITSGKH----AGV 163 Query: 212 HLVLARLPDALPGSKGLSLLLAPRVLPDGSRNGIHCTGIEHKMGIHGSATCSLHFEQAQ- 270 +V A + D G KG+S L P P G E KMG H S T + + + Sbjct: 164 AIVFA-VTDRSAGKKGISCFLVPCDTP-----GFVVGRSEEKMGQHASDTVQIMLDNCRV 217 Query: 271 --AWLVGEPGRGLAAMFVMMNAARLHVGAQGLGLAEAAWQRASAYARERRQSRAPGGTGT 328 L+G+ G G + A R+ + AQ +G+A AA++ A +YAR+R P Sbjct: 218 PATALLGKEGEGYRIALSNLEAGRIGIAAQSVGMARAAFEAAVSYARQRESFGVP----- 272 Query: 329 DLIVRHPAVQKLLMEQRCRIEGARMLTCWAGLLLDLAEHDTDAAMRRVHHERLELITPVI 388 I+ H AV L + ++ AR++ A L D A + Sbjct: 273 --IIEHQAVNFRLADMNTLLDAARLMVWRAAQLKDQGRPCLKEA-------------SMA 317 Query: 389 KAFLTDQGFQCASRALQVFGGHGYVVETGIEQFMRDARITMIYEGSNEIQAIDFLLRKAL 448 K F ++ + AS A+Q+ GG GY + +E+ RD RI IYEG+N+IQ + ++ +A+ Sbjct: 318 KMFASEAAEKIASDAIQIHGGVGYTSDFPVERIYRDVRICQIYEGANDIQRL--VIGRAI 375 Query: 449 ADDR 452 A D+ Sbjct: 376 ASDQ 379 >gi|300311865|ref|YP_003775957.1| acyl-CoA dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 386 Score = 131 bits (329), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 128/420 (30%), Positives = 195/420 (46%), Gaps = 54/420 (12%) Query: 45 EEAGRFAANVVAPLNAIGDREGCRLEHGAVSTPPGFVRAYAQFCEGGWPALACAPEHGGQ 104 + A FAA +AP A D E H + A+ E G+ L GG Sbjct: 14 QSARDFAAGEMAPFAAKWDEEA----HFPLDV-------IAKAGELGFCGLYTPEADGGL 62 Query: 105 GLPHVLDCALYEMLSAANHGWTMYPGLLHGAYACLATHGSPQLQARYLEQIASGQWLATM 164 GL + ++E L+ A Y + + +A+ G P L+A++ EQ+A+G+ + + Sbjct: 63 GLSRLDATVVFEELARACTSTAAYLTIHNMVSWMIASWGQPSLKAQWCEQLAAGRKIGSY 122 Query: 165 CLTEAQAGSDLGQLRTRAVPQEDGSYRITGDKIFISG-GEHDLTDNIVHLVLARLPDALP 223 CLTE +GSD L+T A EDG Y + G K FISG G D V +V+AR Sbjct: 123 CLTEPGSGSDAASLKTTA-RLEDGHYVLNGSKAFISGAGSTD-----VLVVMARTGG--E 174 Query: 224 GSKGLSLLLAPRVLPDGSRNGIHCTGIEHKMGIHGSATCSLHFEQAQA---WLVGEPGRG 280 G++G+S ++ P G+ G+ E KMG + T ++ F+ + L+G+ G+G Sbjct: 175 GARGVSAIVVP-----GNAPGVSYGKKESKMGWNSQPTRTISFDNVKVPADHLLGQEGQG 229 Query: 281 LAAMFVMMNAARLHVGAQGLGLAEAAWQRASAYARERRQSRAPGGTGTDLIVRHPAVQKL 340 ++ R+++ +G A+AA A AY +ER+Q P I A+Q Sbjct: 230 FIFAMKGLDGGRINIATCSVGAAQAALDAAHAYMKERKQFGRP-------IADFQALQFK 282 Query: 341 LMEQRCRIEGARMLTCWAGLLLDLA--EHDTDAAMRRVHHERLELITPVIKAFLTDQGFQ 398 L + + + AR + A LD E T AM K TD GF+ Sbjct: 283 LADMQTELVAARQMVRLAATKLDAGSPEATTYCAM--------------AKRLATDLGFR 328 Query: 399 CASRALQVFGGHGYVVETGIEQFMRDARITMIYEGSNEIQAIDFLLRKALADDRRRLHDF 458 + ALQ+ GG+GY+ E +E++ RD R+ I EG+NEI + + RK L DR L D Sbjct: 329 VCNEALQLHGGYGYIREYPLERYFRDVRVHQILEGTNEIMRV-IISRKLL--DRDNLDDI 385 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.137 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,932,616 Number of extensions: 85869 Number of successful extensions: 275 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 254 Number of HSP's successfully gapped: 9 Length of query: 591 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 500 Effective length of database: 1,188,985 Effective search space: 594492500 Effective search space used: 594492500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 133 (55.8 bits)