BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3903.p (251 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313301|ref|YP_003777393.1| branched-chain amino acid ABC t... 466 e-133 gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPa... 301 3e-83 gi|300313404|ref|YP_003777496.1| branched-chain amino acid ABC t... 298 4e-82 gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC t... 221 4e-59 gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 215 3e-57 >gi|300313301|ref|YP_003777393.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 466 bits (1200), Expect = e-133, Method: Compositional matrix adjust. Identities = 234/251 (93%), Positives = 244/251 (97%) Query: 1 MSELVLEVAQLRASYGKVQALHDIDLKLERGSIATVIGPNGAGKSTLLNAIMGVLPAQGS 60 MSELVL+VAQLRASYGKVQALHDI LKLERGSIATVIGPNGAGKSTLLNAIMGVLPAQG+ Sbjct: 1 MSELVLDVAQLRASYGKVQALHDIHLKLERGSIATVIGPNGAGKSTLLNAIMGVLPAQGT 60 Query: 61 VRYQGQAVERWSLEQRVMAGIALVPERRELFSSMSVEDNLLLGGFRRLRLRQAQPLDQLA 120 VRYQG++VERWSLEQRVMAGIALVPERRELFS+MSVEDNLLLGGFRRLRLRQAQPLDQLA Sbjct: 61 VRYQGRSVERWSLEQRVMAGIALVPERRELFSTMSVEDNLLLGGFRRLRLRQAQPLDQLA 120 Query: 121 TVFELFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPELLMLDEPSLGLAPRIVKEILQ 180 TVF+LFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKP+LLMLDEPSLGLAPRIVKEIL Sbjct: 121 TVFDLFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPQLLMLDEPSLGLAPRIVKEILH 180 Query: 181 IVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTMQGESARLAGDAQVIQAYLGFG 240 IVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVT+QGESA+LAGD QVIQAYLGFG Sbjct: 181 IVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTLQGESAQLAGDPQVIQAYLGFG 240 Query: 241 KKAEVEAAVAS 251 KKA+ E AS Sbjct: 241 KKAQAEVVAAS 251 >gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 301 bits (772), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 152/244 (62%), Positives = 189/244 (77%) Query: 1 MSELVLEVAQLRASYGKVQALHDIDLKLERGSIATVIGPNGAGKSTLLNAIMGVLPAQGS 60 M VLEV L A+YGKV+ L IDL +E+G I TVIGPNGAGK+TLL+AIMGVLP++G+ Sbjct: 1 MGNKVLEVRDLSAAYGKVEVLAGIDLSVEQGKIVTVIGPNGAGKTTLLSAIMGVLPSRGA 60 Query: 61 VRYQGQAVERWSLEQRVMAGIALVPERRELFSSMSVEDNLLLGGFRRLRLRQAQPLDQLA 120 + + G +E+ V AG+ LVPE+RELF+ M++EDNL+LG F+R R Q L Sbjct: 61 MAFDGAIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRTGQRDHAATLE 120 Query: 121 TVFELFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPELLMLDEPSLGLAPRIVKEILQ 180 V+ LFPRL+ERRSQQAGTLSGGERQMLA+GRA+MAKP LLMLDEPSLGLAP IV+EI + Sbjct: 121 EVYTLFPRLRERRSQQAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIFR 180 Query: 181 IVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTMQGESARLAGDAQVIQAYLGFG 240 I++ELR G+S+LLVEQNARAALQ ADYGYVLE G + M G +++LA D +VI+AYLG Sbjct: 181 IIAELRRRGVSILLVEQNARAALQVADYGYVLENGAIRMHGPASQLAHDRRVIEAYLGLS 240 Query: 241 KKAE 244 K + Sbjct: 241 GKHQ 244 >gi|300313404|ref|YP_003777496.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 298 bits (762), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 148/241 (61%), Positives = 189/241 (78%), Gaps = 4/241 (1%) Query: 4 LVLEVAQLRASYGKVQALHDIDLKLERGSIATVIGPNGAGKSTLLNAIMGVLP----AQG 59 ++LEV+ L A YGKV AL D L L G I TVIGPNGAGKSTLLNA+MG LP A G Sbjct: 24 VLLEVSGLSARYGKVAALTDTALSLRAGQIVTVIGPNGAGKSTLLNAMMGALPSGAAASG 83 Query: 60 SVRYQGQAVERWSLEQRVMAGIALVPERRELFSSMSVEDNLLLGGFRRLRLRQAQPLDQL 119 + +QG+ V + +E+RV G++LVPE+RELF++M+VEDNLLLG ++R R ++ LDQ Sbjct: 84 RIAFQGEDVSQMEVEERVARGLSLVPEKRELFTTMTVEDNLLLGAYKRHRNGESGYLDQQ 143 Query: 120 ATVFELFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPELLMLDEPSLGLAPRIVKEIL 179 V+ LFPRLKERR Q AGTLSGGERQMLA+GRA+MAKP++LMLDEPSLGLAP I +EIL Sbjct: 144 DFVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITREIL 203 Query: 180 QIVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTMQGESARLAGDAQVIQAYLGF 239 I+S+LR+ G++ LLVEQNARAALQ ADYGYVLE+G++ G + LA D++++++YLG Sbjct: 204 SIISQLRSTGVATLLVEQNARAALQVADYGYVLEMGEIVCAGPAGVLAEDSRIVESYLGV 263 Query: 240 G 240 G Sbjct: 264 G 264 >gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 221 bits (563), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 117/241 (48%), Positives = 163/241 (67%), Gaps = 7/241 (2%) Query: 5 VLEVAQLRASYGKVQALHDIDLKLERGSIATVIGPNGAGKSTLLNAIMGVL-PAQGSVRY 63 +L ++ L A+YGKV+ LH I +++ +G + T+IG NGAGK+T + AI G++ P G V Sbjct: 1 MLTISNLHAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL 60 Query: 64 QGQAVERWSLEQRVMAGIALVPERRELFSSMSVEDNLLLGGFRRLRLRQAQPLDQLAT-- 121 G+ + + G+A PE R +F++MSV DNLLLG F R +A+P +A Sbjct: 61 GGKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNLLLGAFPRFT--RARPKGDIAHDL 118 Query: 122 --VFELFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPELLMLDEPSLGLAPRIVKEIL 179 ELFPRLKER+SQ AGTLSGGE+QMLA+ RA+M PE+++LDEPS+GLAP +V E+ Sbjct: 119 ERALELFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVF 178 Query: 180 QIVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTMQGESARLAGDAQVIQAYLGF 239 +I+ L+ G+++LLVEQ A AAL ADYGYVLE GK+++ G + +L D V AYLG Sbjct: 179 RIIVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLGG 238 Query: 240 G 240 G Sbjct: 239 G 239 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 215 bits (548), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 114/244 (46%), Positives = 169/244 (69%), Gaps = 7/244 (2%) Query: 1 MSELVLEVAQLRASYGKVQALHDIDLKLERGSIATVIGPNGAGKSTLLNAIMGVLPA--- 57 M+ +L+V QL +YG +QA+ IDL++ G + T+IG NGAGK+T L AI G LPA Sbjct: 1 MTTNILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRV 60 Query: 58 QGSVRYQGQAVERWSLEQRVMAGIALVPERRELFSSMSVEDNLLLGGFRRLRLRQ-AQPL 116 +G + Y GQ ++ + V +A+VPE R +F+ MS+++NLL+G + Q A + Sbjct: 61 EGHIEYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADI 120 Query: 117 DQLATVFELFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPELLMLDEPSLGLAPRIVK 176 D+ F +FPRLKER +Q AGTLSGGE+QMLA+ RA+M+ P+LL+LDEPS+GL+P +V+ Sbjct: 121 DKW---FAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVE 177 Query: 177 EILQIVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTMQGESARLAGDAQVIQAY 236 +I +++ + GI++LLVEQNA+ AL+ A GYV+E G +TMQG++ ++ D +V AY Sbjct: 178 KIFEVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAY 237 Query: 237 LGFG 240 LG G Sbjct: 238 LGEG 241 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 695,855 Number of extensions: 27228 Number of successful extensions: 503 Number of sequences better than 1.0e-08: 127 Number of HSP's gapped: 343 Number of HSP's successfully gapped: 140 Length of query: 251 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 168 Effective length of database: 1,226,865 Effective search space: 206113320 Effective search space used: 206113320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)