BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3897.p (417 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313295|ref|YP_003777387.1| acetyl-CoA acetyltransferase [H... 772 0.0 gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [H... 221 7e-59 gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [H... 220 2e-58 gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herba... 206 4e-54 gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Her... 186 3e-48 >gi|300313295|ref|YP_003777387.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 417 Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/417 (93%), Positives = 406/417 (97%) Query: 1 MAQAAFYSSFKDIWLIGGVRTPMVDYCTSFSQLSPTDMGIKVAREVLARTGIAATDIGSV 60 MAQAAFYSSFKDIWL+GGVRTPMVDYCTSFSQLSPTDMGIKVAREVLARTGI DIGSV Sbjct: 1 MAQAAFYSSFKDIWLVGGVRTPMVDYCTSFSQLSPTDMGIKVAREVLARTGIDPADIGSV 60 Query: 61 IAGNMAPGDAYQYMLPRHIGLYAGVPITTPAIMVQRICGTGFELIRQAGDQIERGYTETA 120 +AGNMAPGDAYQYMLPRHIGLYAGVPI+TPAIMVQRICGTGFELIRQAGDQIERGYTE A Sbjct: 61 VAGNMAPGDAYQYMLPRHIGLYAGVPISTPAIMVQRICGTGFELIRQAGDQIERGYTEAA 120 Query: 121 LIVGSESMTRNPIAAFDHRTGFKLGAPVQFQDYMWEALVDPAPGITMPQTAENLARKYGI 180 LIVGSESMTRNPIAAF HR+GFKLGAPV+FQDYMWEALVDPAPGITMPQTAENLA+KYGI Sbjct: 121 LIVGSESMTRNPIAAFGHRSGFKLGAPVEFQDYMWEALVDPAPGITMPQTAENLAKKYGI 180 Query: 181 TRAEVDAYAAYSFERALKAQAAGFHAGEIVSVVNETFKLDGYHDRHIKLQGKISEASTDT 240 TRAEVD YAAYSFERALKAQAAGFHAGEIV VVNETF+LDGY+DRHIKLQGK+SEA+ DT Sbjct: 181 TRAEVDEYAAYSFERALKAQAAGFHAGEIVPVVNETFRLDGYNDRHIKLQGKLSEAAADT 240 Query: 241 HPRPSPVDVLAKLRTLYPDGVQTGGNSSALVDAAAATIVASGDYLRRNDRQPLARVVAAA 300 HPRPSPV+VLAKLRTLYPDGVQTGGNSSALVDAAAATIVASGDY+RRND+ PLARVVAAA Sbjct: 241 HPRPSPVEVLAKLRTLYPDGVQTGGNSSALVDAAAATIVASGDYVRRNDKAPLARVVAAA 300 Query: 301 VAGVPPEIMGIGPVPAIRTLLERNGLSVNDIGCFEINEAQGAQIVAVERELGLDRERLNV 360 VAGVPPEIMGIGPVPAIRTLLERNGL+V DIGCFEINEAQGAQIVAVERELG+DRERLNV Sbjct: 301 VAGVPPEIMGIGPVPAIRTLLERNGLTVADIGCFEINEAQGAQIVAVERELGIDRERLNV 360 Query: 361 NGGAIALGHPLAATGVRLSITAAREMNRRGARYSVASACIGGGQGIALLLENPSASH 417 NGGAIALGHPLAATGVRLSITAAREMNRRGARY VASACIGGGQGIALLLENPSASH Sbjct: 361 NGGAIALGHPLAATGVRLSITAAREMNRRGARYCVASACIGGGQGIALLLENPSASH 417 >gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 391 Score = 221 bits (564), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 141/404 (34%), Positives = 216/404 (53%), Gaps = 20/404 (4%) Query: 12 DIWLIGGVRTPMVDYCTSFSQLSPTDMGIKVAREVLARTGIAATDIGSVIAGNMAPGDAY 71 D+ ++ RT + + + S+++ D+G +V + +LA+TGI I VI G + Sbjct: 3 DVVIVAAQRTAIGKFGGALSKIAAADLGAQVIKALLAKTGIKPEAISEVILGQVLTAGLG 62 Query: 72 QYMLPRHIGLYAGVPITTPAIMVQRICGTGFELIRQAGDQIERGYTETALIVGSESMTRN 131 Q + + + +G+P PA +V ++CG+G + ++ A I G + + G E+M+ + Sbjct: 63 QNPARQSV-IKSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIRCGDAQIVIAGGQENMSAS 121 Query: 132 PIAAFDHRTGFKLGAPVQFQDYMWEALVDPAPGITMPQTAENLARKYGITRAEVDAYAAY 191 P + R GF++G + + L D M TAEN+A+K+ I+R E DA+AA Sbjct: 122 PHVLNNSRDGFRMGDAKLTDTMIVDGLWDVYNQYHMGITAENVAKKFEISREEQDAFAAA 181 Query: 192 SFERALKAQAAGFHAGEIVSVVNETFKLDGYHDRHIKLQGKISEASTDTH---PRPSPVD 248 S +A AQ AG EIV I+++GK DT + Sbjct: 182 SQNKAEAAQKAGKFKDEIVP---------------IEIKGKKETVVFDTDEFVKHGVTAE 226 Query: 249 VLAKLRTLYPD-GVQTGGNSSALVDAAAATIVASGDYLRRNDRQPLARVVAAAVAGVPPE 307 LA LR + G T GN+S + D AAA +V S LA++ A + AG+ P Sbjct: 227 SLATLRPAFDKAGTVTAGNASGINDGAAAVVVTSAKLAAELGLPVLAKIKAYSSAGLDPS 286 Query: 308 IMGIGPVPAIRTLLERNGLSVNDIGCFEINEAQGAQIVAVERELGLDRERLNVNGGAIAL 367 IMG+GPVPA + L++ G + D+ EINEA AQ +AV +++G D ++NVNGGAIAL Sbjct: 287 IMGMGPVPASQLTLKKAGWTPQDLDLMEINEAFAAQAIAVNKQMGWDTSKINVNGGAIAL 346 Query: 368 GHPLAATGVRLSITAAREMNRRGARYSVASACIGGGQGIALLLE 411 GHP+ A+G R+ +T EM RR A+ +AS CIGGG G+AL +E Sbjct: 347 GHPIGASGCRVLVTLLHEMVRRDAKKGLASLCIGGGMGVALAVE 390 >gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 220 bits (560), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 145/410 (35%), Positives = 219/410 (53%), Gaps = 20/410 (4%) Query: 10 FKDIWLIGGVRTPMVDYCTSFSQLSPTDMGIKVAREVLART-GIAATDIGSVIAGNMAPG 68 KD+++ +RTP+ Y + + D+G R ++ R + + VI G Sbjct: 1 MKDVFICDAIRTPIGRYGGALKDVRADDLGAVPLRALMERNPQVDWKAVDDVIYGCANQA 60 Query: 69 DAYQYMLPRHIGLYAGVPITTPAIMVQRICGTGFELIRQAGDQIERGYTETALIVGSESM 128 + R L AG+P P + R+CG+G + + A I+ G T+ + G ESM Sbjct: 61 GEDNRNVARMSLLLAGLPQEVPGSTINRLCGSGMDALGTAARAIKSGETQLMIAGGVESM 120 Query: 129 TRNPIAAFDHRTGFKLGAPVQFQDYMW---EALVDPAPGI-TMPQTAENLARKYGITRAE 184 TR P + F A +Q W AL+ G+ MP+TAEN+A + ++RA+ Sbjct: 121 TRAPFVMGKADSAFSRQAAIQDTTIGWRFVNALMKQKYGVDAMPETAENVAVDFKVSRAD 180 Query: 185 VDAYAAYSFERALKAQAAGFHAGEIVSVVNETFKLDGYHDRHIKLQGKISEASTDTHPRP 244 D +A S +A AQA G A EIV VV K G + D HPR Sbjct: 181 QDQFAVRSQAKAAAAQANGTLAQEIVPVVIPQKK------------GDPITVTQDEHPRA 228 Query: 245 SPVDVLAKLR-TLYPDGVQTGGNSSALVDAAAATIVASGDYLRRNDRQPLARVVAAAVAG 303 + ++ LA+L+ + PDG T GN+S + D A A ++AS + + + +P AR++ A AG Sbjct: 229 TSMEALARLKGVVKPDGSVTAGNASGVNDGACALLLASAEAVEKYQLKPRARILGMATAG 288 Query: 304 VPPEIMGIGPVPAIRTLLERNGLSVNDIGCFEINEAQGAQIVAVERELGL--DRERLNVN 361 V P IMG+GP PA + +L + G++++ + E+NEA +Q +AV RELG+ D R+N N Sbjct: 289 VAPRIMGMGPAPASKKVLAQLGMTIDQMDVIELNEAFASQGLAVLRELGVADDDARVNPN 348 Query: 362 GGAIALGHPLAATGVRLSITAAREMNRRGARYSVASACIGGGQGIALLLE 411 GGAIALGHPL +G RL TA ++ R G RY++ + CIG GQGIA+++E Sbjct: 349 GGAIALGHPLGMSGARLVTTATYQLERTGGRYALCTMCIGVGQGIAMVIE 398 >gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 401 Score = 206 bits (523), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 150/402 (37%), Positives = 211/402 (52%), Gaps = 21/402 (5%) Query: 19 VRTPMVDYCTSFSQLSPTDMGIKVAREVLART-GIAATDIGSVIAGNMAPGDAYQYMLPR 77 +RTP Y + + D+ R ++ R G+ + + ++ G + R Sbjct: 9 IRTPFGRYGGALGAVRADDLAAAPIRSLMERNPGVDWSRVEDILYGCANQAGEDNRNVAR 68 Query: 78 HIGLYAGVPITTPAIMVQRICGTGFELIRQAGDQIERGYTETALIVGSESMTRNPIAAFD 137 GL AG+PI P V R+CG+ + + A I+ G + + G ESMTR P Sbjct: 69 MAGLLAGLPIAVPGSTVNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMTRAPFVMGK 128 Query: 138 HRTGFKLGAPVQFQDYMW---EALVDPAPGI-TMPQTAENLARKYGITRAEVDAYAAYSF 193 + F A + W L+ GI +MP+TAEN+A + I RA+ DA+A S Sbjct: 129 AESAFARSAAIFDTTIGWRFVNPLMKAQYGIDSMPETAENVATDFQINRADQDAFALRSQ 188 Query: 194 ERALKAQAAGFHAGEIVSVVNETFKLDGYHDRHIKLQGKISEASTDTHPRP-SPVDVLAK 252 +R AQAAGF AGEI + K G +TD HPRP + + LAK Sbjct: 189 QRWAAAQAAGFFAGEIAPLTIPQKK------------GDPLVVTTDEHPRPDTTLATLAK 236 Query: 253 LR-TLYPDGVQTGGNSSALVDAAAATIVASGDYLRRNDRQPLARVVAAAVAGVPPEIMGI 311 L+ + PDG T GN+S + D A A ++AS +P ARV+ A AGV P IMG Sbjct: 237 LKGVVRPDGTVTAGNASGVNDGACALLLASPKAADLYRLKPRARVLGMATAGVAPRIMGF 296 Query: 312 GPVPAIRTLLERNGLSVNDIGCFEINEAQGAQIVAVERELGL--DRERLNVNGGAIALGH 369 GP PA+R +L + GL++ + E+NEA AQ +AV R+LGL D +N NGGAIA+GH Sbjct: 297 GPAPAVRKVLAQVGLTLAQMDVIELNEAFAAQGLAVMRDLGLPDDAAHVNPNGGAIAIGH 356 Query: 370 PLAATGVRLSITAAREMNRRGARYSVASACIGGGQGIALLLE 411 PL A+G RL TA ++ R G RY++ + CIG GQGIAL++E Sbjct: 357 PLGASGARLVTTAINQLERSGGRYALCTMCIGVGQGIALVIE 398 >gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Herbaspirillum seropedicae SmR1] Length = 398 Score = 186 bits (472), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 137/407 (33%), Positives = 205/407 (50%), Gaps = 20/407 (4%) Query: 10 FKDIWLIGGVRTPMVDYCTS-FSQLSPTDMGIKVAREVLART-GIAATDIGSVIAGNMAP 67 +D +++ RTP+ F P D+ ++ + +A+ G+ I I G P Sbjct: 5 LQDAYIVAATRTPIGKAPRGMFKNTRPDDLLVRAIQSAVAQVPGLDPKLIEDAIVGCSFP 64 Query: 68 GDAYQYMLPRHIGLYAGVPITTPAIMVQRICGTGFELIRQAGDQIERGYTETALIVGSES 127 A + R+ L AG+P T + + R C +G I A D+I G + + G+ES Sbjct: 65 EGAQGLNMARNAVLLAGLPNTIGGVTINRYCASGITAIAMAADRIRVGEADVMIAAGAES 124 Query: 128 MTRNPIAAFDHRTGFKLGAPVQFQDYMWEALVDPAPGITMPQTAENLARKYGITRAEVDA 187 M+ P+ F F+D V A G+ + TAE +A+++ ++R D Sbjct: 125 MSMVPMMGFHPSININ-----AFKDEN----VGMAYGMGL--TAEKVAQQWKVSREAQDE 173 Query: 188 YAAYSFERALKAQAAGFHAGEIVSV-VNETFKLDGYHDRHIKLQGKISEASTDTHPRP-S 245 ++ S ++A+ AQ AG A E+ S + E F + +K + S D PR S Sbjct: 174 FSLASHQKAIAAQEAGEFADEMTSFEIVERFPNLATGEIDVKTR----TVSLDEGPRADS 229 Query: 246 PVDVLAKLRTLYP-DGVQTGGNSSALVDAAAATIVASGDYLRRNDRQPLARVVAAAVAGV 304 + LAKL+ ++ G T GNSS D A A I+ S L++ + PLAR V+ AV GV Sbjct: 230 NLAALAKLKPVFAAKGSVTAGNSSQTSDGAGALIIVSEKILKQFNLTPLARFVSFAVRGV 289 Query: 305 PPEIMGIGPVPAIRTLLERNGLSVNDIGCFEINEAQGAQIVAVERELGLDRERLNVNGGA 364 PPEIMGIGP AI L+ GL+ + I E+NEA AQ +AV +LGLD ++N GGA Sbjct: 290 PPEIMGIGPKEAIPAALKAGGLTQDQIDWIELNEAFAAQALAVIGDLGLDPSKVNPMGGA 349 Query: 365 IALGHPLAATGVRLSITAAREMNRRGARYSVASACIGGGQGIALLLE 411 IALGHPL ATG + T + R+ +Y + + C+G G G A + E Sbjct: 350 IALGHPLGATGAIRAATTIHALRRKNLKYGMVTMCVGTGMGAAGIFE 396 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,314,638 Number of extensions: 56140 Number of successful extensions: 212 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 197 Number of HSP's successfully gapped: 6 Length of query: 417 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 329 Effective length of database: 1,203,190 Effective search space: 395849510 Effective search space used: 395849510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)