BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3891.p
         (224 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313289|ref|YP_003777381.1| 3-oxoadipate CoA-transferase su...   449   e-127
gi|300313920|ref|YP_003778012.1| acyl CoA:acetate/3-ketoacid CoA...   205   2e-54

>gi|300313289|ref|YP_003777381.1| 3-oxoadipate CoA-transferase
           subunit A [Herbaspirillum seropedicae SmR1]
          Length = 224

 Score =  449 bits (1154), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 216/224 (96%), Positives = 224/224 (100%)

Query: 1   VINKISDSLEQAVADIHDGATIMIGGFGNAGMPSALIDALIAQGARDLTIVNNNAGNGET 60
           +INKISDSLEQAVADIHDGATIMIGGFGNAGMPSALIDALIAQGARDLTIVNNNAGNGET
Sbjct: 1   MINKISDSLEQAVADIHDGATIMIGGFGNAGMPSALIDALIAQGARDLTIVNNNAGNGET 60

Query: 61  GLAALLKTKRVRKIICSFPRQADSQVFDALYRSGEIELELTPQGNLAERIRAAGAGIGGF 120
           GLAALLKTKRV+KI+CSFPRQ+DSQVFDALYRSGEIELELTPQGNLAERIRAAGAGIGGF
Sbjct: 61  GLAALLKTKRVKKIVCSFPRQSDSQVFDALYRSGEIELELTPQGNLAERIRAAGAGIGGF 120

Query: 121 FSPTGYGTMLAEGRETREINGRHYVLESPIHADFALIKALRGDRWGNLVYRKTARNFGPI 180
           FSPTGYGTMLAEG+ETREINGRHYVLESPIHADFALIKALRGDRWGNLVYRKTARNFGPI
Sbjct: 121 FSPTGYGTMLAEGKETREINGRHYVLESPIHADFALIKALRGDRWGNLVYRKTARNFGPI 180

Query: 181 MAMAAKCTIAQVNDVVELGQLDPENIITPGIFVQRIVQTKEAQQ 224
           MAMAAKCTIAQV++VVELGQLDPENI+TPGIFVQRIVQTKEAQQ
Sbjct: 181 MAMAAKCTIAQVSEVVELGQLDPENIVTPGIFVQRIVQTKEAQQ 224


>gi|300313920|ref|YP_003778012.1| acyl CoA:acetate/3-ketoacid CoA
           transferase subunit alpha [Herbaspirillum seropedicae
           SmR1]
          Length = 231

 Score =  205 bits (522), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 111/217 (51%), Positives = 153/217 (70%), Gaps = 3/217 (1%)

Query: 2   INKISDSLEQAVADI-HDGATIMIGGFGNAGMPSALIDALIAQGARDLTIVNNNAGNGET 60
           +NK+      A+ DI  DG TI +GGFG  G+P ALI AL   G ++LT ++NNAG    
Sbjct: 1   MNKVYPDAATALKDIVKDGQTIAVGGFGLCGIPEALIAALRDSGVQNLTAISNNAGVDGF 60

Query: 61  GLAALLKTKRVRKIICSFPRQADSQVFDALYRSGEIELELTPQGNLAERIRAAGAGIGGF 120
           GL  LL T++++K+I S+    +++ F+  Y +GE+ELE TPQG LAE++RA GAGI  F
Sbjct: 61  GLGQLLTTRQIKKMIASYV--GENKEFERQYLAGELELEFTPQGTLAEKLRAGGAGIPAF 118

Query: 121 FSPTGYGTMLAEGRETREINGRHYVLESPIHADFALIKALRGDRWGNLVYRKTARNFGPI 180
           F+ TG GT++AEG+E RE +G  YV+E  + AD +L+KA + D+ GNLV+ KTARNF P 
Sbjct: 119 FTKTGVGTLVAEGKEVREFDGERYVMERSLVADVSLVKAHKADKAGNLVFNKTARNFNPN 178

Query: 181 MAMAAKCTIAQVNDVVELGQLDPENIITPGIFVQRIV 217
           +AMA K T+ +V ++VE+GQLDP+ I TPGIFV RIV
Sbjct: 179 VAMAGKVTVVEVEELVEVGQLDPDQIHTPGIFVHRIV 215


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 648,488
Number of extensions: 25438
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 2
Length of query: 224
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,231,600
Effective search space: 174887200
Effective search space used: 174887200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)