BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3890.p
         (213 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313288|ref|YP_003777380.1| 3-oxoadipate CoA-transferase su...   428   e-121
gi|300313919|ref|YP_003778011.1| acyl CoA:acetate/3-ketoacid CoA...   205   3e-54

>gi|300313288|ref|YP_003777380.1| 3-oxoadipate CoA-transferase
           subunit B [Herbaspirillum seropedicae SmR1]
          Length = 213

 Score =  428 bits (1100), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/213 (97%), Positives = 210/213 (98%)

Query: 1   MNRFTREQIAARVAQDIPEGAYVNLGIGLPTKVANYLPADKEIFLHSENGVLGMGPAPAP 60
           M RFTRE+IAARVAQDIPEGAYVNLGIGLPTKVANYLPADKEIFLHSENGVLGMGPAPAP
Sbjct: 1   MKRFTREEIAARVAQDIPEGAYVNLGIGLPTKVANYLPADKEIFLHSENGVLGMGPAPAP 60

Query: 61  GEEDEDLINAGKQPVTLLTGGSYFHHADSFAMMRGGHLDICVLGAFQVSAKGDLANWHTG 120
           GEEDEDLINAGKQPVTLLTGG+YFHHADSFAMMRGGHLDICVLGAFQVSAKGDLANWHTG
Sbjct: 61  GEEDEDLINAGKQPVTLLTGGAYFHHADSFAMMRGGHLDICVLGAFQVSAKGDLANWHTG 120

Query: 121 APDAIPAVGGAMDLAIGAKQVFVMMDHQTKTGESKLVEACSYPLTGIACVNRIYTDLAVI 180
           APDAIPAVGGAMDLAIGAKQVFVMMDHQTKTGESKLVEACSYPLTGI CVNRIYTDLAVI
Sbjct: 121 APDAIPAVGGAMDLAIGAKQVFVMMDHQTKTGESKLVEACSYPLTGIGCVNRIYTDLAVI 180

Query: 181 DVTPQGLQVREIVEGLSFEELQKLTGAPLRPAA 213
           DVTP GLQVREIVEGLSF+ELQKLTGAPLRPAA
Sbjct: 181 DVTPHGLQVREIVEGLSFDELQKLTGAPLRPAA 213


>gi|300313919|ref|YP_003778011.1| acyl CoA:acetate/3-ketoacid CoA
           transferase subunit beta [Herbaspirillum seropedicae
           SmR1]
          Length = 216

 Score =  205 bits (521), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 111/210 (52%), Positives = 150/210 (71%), Gaps = 5/210 (2%)

Query: 4   FTREQIAARVAQDIPEGAYVNLGIGLPTKVANYLPADKEIFLHSENGVLGMGPAPAPGEE 63
           +TR+++AAR A+++ +G YVNLGIGLPT VAN++P+D E++L SENG+LG+GP P   + 
Sbjct: 3   WTRDEMAARAAKELQDGFYVNLGIGLPTLVANHVPSDIEVWLQSENGLLGIGPFPTEDQV 62

Query: 64  DEDLINAGKQPVTLLTGGSYFHHADSFAMMRGGHLDICVLGAFQVSAKGDLANWHTGAPD 123
           D DLINAGKQ VT + G S+F  ADSF M+RGG ++I +LGA QVSAKGDLANW      
Sbjct: 63  DPDLINAGKQTVTTIPGSSFFSSADSFGMIRGGKINIAILGAMQVSAKGDLANWMIPG-K 121

Query: 124 AIPAVGGAMDLAIGAKQVFVMMDHQTK----TGESKLVEACSYPLTGIACVNRIYTDLAV 179
            +  +GGAMDL  G  +V V+M+H  K    +   K++  C+ PLTG+  VNRI TDL V
Sbjct: 122 MVKGMGGAMDLVAGVGRVVVLMEHVAKAKDGSTSKKILNDCNLPLTGVGVVNRIITDLGV 181

Query: 180 IDVTPQGLQVREIVEGLSFEELQKLTGAPL 209
           IDVTP GL++ E+  G++ EE+ + T APL
Sbjct: 182 IDVTPGGLKLIELASGVTKEEVIEKTEAPL 211


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 747,893
Number of extensions: 34826
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 2
Length of query: 213
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 132
Effective length of database: 1,236,335
Effective search space: 163196220
Effective search space used: 163196220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)