BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3889.p (400 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [H... 802 0.0 gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herba... 619 e-178 gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [H... 285 6e-78 gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Her... 279 3e-76 gi|300310259|ref|YP_003774351.1| acetyl-CoA acetyltransferase [H... 236 2e-63 >gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/400 (99%), Positives = 399/400 (99%) Query: 1 MKDVFICDAIRTPIGRYGGALKDVRADDLGAVPLRALMERNPQVDWKAVDDVIFGCANQA 60 MKDVFICDAIRTPIGRYGGALKDVRADDLGAVPLRALMERNPQVDWKAVDDVI+GCANQA Sbjct: 1 MKDVFICDAIRTPIGRYGGALKDVRADDLGAVPLRALMERNPQVDWKAVDDVIYGCANQA 60 Query: 61 GEDNRNVARMSLLLAGLPQEVPGSTINRLCGSGMDALGTAARAIKSGETQLMIAGGVESM 120 GEDNRNVARMSLLLAGLPQEVPGSTINRLCGSGMDALGTAARAIKSGETQLMIAGGVESM Sbjct: 61 GEDNRNVARMSLLLAGLPQEVPGSTINRLCGSGMDALGTAARAIKSGETQLMIAGGVESM 120 Query: 121 TRAPFVMGKADSAFSRQAAIQDTTIGWRFVNALMKQKYGVDAMPETAENVAVDFKVSRQD 180 TRAPFVMGKADSAFSRQAAIQDTTIGWRFVNALMKQKYGVDAMPETAENVAVDFKVSR D Sbjct: 121 TRAPFVMGKADSAFSRQAAIQDTTIGWRFVNALMKQKYGVDAMPETAENVAVDFKVSRAD 180 Query: 181 QDQFAVRSQAKAAAAQANGTLAQEIVPVVIPQKKGDPITVTQDEHPRATSMEALARLKGV 240 QDQFAVRSQAKAAAAQANGTLAQEIVPVVIPQKKGDPITVTQDEHPRATSMEALARLKGV Sbjct: 181 QDQFAVRSQAKAAAAQANGTLAQEIVPVVIPQKKGDPITVTQDEHPRATSMEALARLKGV 240 Query: 241 VKPDGTVTAGNASGVNDGACALLLASAEAVEKYQLKPRARILGMATAGVAPRIMGMGPAP 300 VKPDG+VTAGNASGVNDGACALLLASAEAVEKYQLKPRARILGMATAGVAPRIMGMGPAP Sbjct: 241 VKPDGSVTAGNASGVNDGACALLLASAEAVEKYQLKPRARILGMATAGVAPRIMGMGPAP 300 Query: 301 ASKKVLAQLGMSIDQMDVIELNEAFASQGLAVLRELGVADDDARVNPNGGAIALGHPLGM 360 ASKKVLAQLGM+IDQMDVIELNEAFASQGLAVLRELGVADDDARVNPNGGAIALGHPLGM Sbjct: 301 ASKKVLAQLGMTIDQMDVIELNEAFASQGLAVLRELGVADDDARVNPNGGAIALGHPLGM 360 Query: 361 SGARLVTTATYQLERTGGRYALCTMCIGVGQGIAMVIERV 400 SGARLVTTATYQLERTGGRYALCTMCIGVGQGIAMVIERV Sbjct: 361 SGARLVTTATYQLERTGGRYALCTMCIGVGQGIAMVIERV 400 >gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 401 Score = 619 bits (1597), Expect = e-178, Method: Compositional matrix adjust. Identities = 307/399 (76%), Positives = 350/399 (87%), Gaps = 1/399 (0%) Query: 3 DVFICDAIRTPIGRYGGALKDVRADDLGAVPLRALMERNPQVDWKAVDDVIFGCANQAGE 62 + ICDAIRTP GRYGGAL VRADDL A P+R+LMERNP VDW V+D+++GCANQAGE Sbjct: 2 EALICDAIRTPFGRYGGALGAVRADDLAAAPIRSLMERNPGVDWSRVEDILYGCANQAGE 61 Query: 63 DNRNVARMSLLLAGLPQEVPGSTINRLCGSGMDALGTAARAIKSGETQLMIAGGVESMTR 122 DNRNVARM+ LLAGLP VPGST+NRLCGS +DA+G AARAIKSGE QLMIAGGVESMTR Sbjct: 62 DNRNVARMAGLLAGLPIAVPGSTVNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMTR 121 Query: 123 APFVMGKADSAFSRQAAIQDTTIGWRFVNALMKQKYGVDAMPETAENVAVDFKVSRQDQD 182 APFVMGKA+SAF+R AAI DTTIGWRFVN LMK +YG+D+MPETAENVA DF+++R DQD Sbjct: 122 APFVMGKAESAFARSAAIFDTTIGWRFVNPLMKAQYGIDSMPETAENVATDFQINRADQD 181 Query: 183 QFAVRSQAKAAAAQANGTLAQEIVPVVIPQKKGDPITVTQDEHPRA-TSMEALARLKGVV 241 FA+RSQ + AAAQA G A EI P+ IPQKKGDP+ VT DEHPR T++ LA+LKGVV Sbjct: 182 AFALRSQQRWAAAQAAGFFAGEIAPLTIPQKKGDPLVVTTDEHPRPDTTLATLAKLKGVV 241 Query: 242 KPDGTVTAGNASGVNDGACALLLASAEAVEKYQLKPRARILGMATAGVAPRIMGMGPAPA 301 +PDGTVTAGNASGVNDGACALLLAS +A + Y+LKPRAR+LGMATAGVAPRIMG GPAPA Sbjct: 242 RPDGTVTAGNASGVNDGACALLLASPKAADLYRLKPRARVLGMATAGVAPRIMGFGPAPA 301 Query: 302 SKKVLAQLGMSIDQMDVIELNEAFASQGLAVLRELGVADDDARVNPNGGAIALGHPLGMS 361 +KVLAQ+G+++ QMDVIELNEAFA+QGLAV+R+LG+ DD A VNPNGGAIA+GHPLG S Sbjct: 302 VRKVLAQVGLTLAQMDVIELNEAFAAQGLAVMRDLGLPDDAAHVNPNGGAIAIGHPLGAS 361 Query: 362 GARLVTTATYQLERTGGRYALCTMCIGVGQGIAMVIERV 400 GARLVTTA QLER+GGRYALCTMCIGVGQGIA+VIERV Sbjct: 362 GARLVTTAINQLERSGGRYALCTMCIGVGQGIALVIERV 400 >gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 391 Score = 285 bits (728), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 168/400 (42%), Positives = 247/400 (61%), Gaps = 10/400 (2%) Query: 1 MKDVFICDAIRTPIGRYGGALKDVRADDLGAVPLRALMERNPQVDWKAVDDVIFGCANQA 60 M DV I A RT IG++GGAL + A DLGA ++AL+ + + +A+ +VI G A Sbjct: 1 MDDVVIVAAQRTAIGKFGGALSKIAAADLGAQVIKALLAKT-GIKPEAISEVILGQVLTA 59 Query: 61 GEDNRNVARMSLLLAGLPQEVPGSTINRLCGSGMDALGTAARAIKSGETQLMIAGGVESM 120 G +N AR S++ +GLP VP + ++CGSG+ A+ AA+AI+ G+ Q++IAGG E+M Sbjct: 60 GL-GQNPARQSVIKSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIRCGDAQIVIAGGQENM 118 Query: 121 TRAPFVMGKADSAFSR-QAAIQDTTIGWRFVNALMKQKYGVDAMPETAENVAVDFKVSRQ 179 + +P V+ + F A + DT I V+ L Y M TAENVA F++SR+ Sbjct: 119 SASPHVLNNSRDGFRMGDAKLTDTMI----VDGLW-DVYNQYHMGITAENVAKKFEISRE 173 Query: 180 DQDQFAVRSQAKAAAAQANGTLAQEIVPVVIPQKKGDPITVTQDEHPRATSMEALARLKG 239 +QD FA SQ KA AAQ G EIVP+ I KK + T + + E+LA L+ Sbjct: 174 EQDAFAAASQNKAEAAQKAGKFKDEIVPIEIKGKKETVVFDTDEFVKHGVTAESLATLRP 233 Query: 240 VVKPDGTVTAGNASGVNDGACALLLASAEAVEKYQLKPRARILGMATAGVAPRIMGMGPA 299 GTVTAGNASG+NDGA A+++ SA+ + L A+I ++AG+ P IMGMGP Sbjct: 234 AFDKAGTVTAGNASGINDGAAAVVVTSAKLAAELGLPVLAKIKAYSSAGLDPSIMGMGPV 293 Query: 300 PASKKVLAQLGMSIDQMDVIELNEAFASQGLAVLRELGVADDDARVNPNGGAIALGHPLG 359 PAS+ L + G + +D++E+NEAFA+Q +AV +++G D +++N NGGAIALGHP+G Sbjct: 294 PASQLTLKKAGWTPQDLDLMEINEAFAAQAIAVNKQMGW--DTSKINVNGGAIALGHPIG 351 Query: 360 MSGARLVTTATYQLERTGGRYALCTMCIGVGQGIAMVIER 399 SG R++ T +++ R + L ++CIG G G+A+ +ER Sbjct: 352 ASGCRVLVTLLHEMVRRDAKKGLASLCIGGGMGVALAVER 391 >gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Herbaspirillum seropedicae SmR1] Length = 398 Score = 279 bits (714), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 175/411 (42%), Positives = 240/411 (58%), Gaps = 28/411 (6%) Query: 1 MKDVFICDAIRTPIGRYG-GALKDVRADDLGAVPLRALMERNPQVDWKAVDDVIFGCANQ 59 ++D +I A RTPIG+ G K+ R DDL +++ + + P +D K ++D I GC+ Sbjct: 5 LQDAYIVAATRTPIGKAPRGMFKNTRPDDLLVRAIQSAVAQVPGLDPKLIEDAIVGCSFP 64 Query: 60 AGEDNRNVARMSLLLAGLPQEVPGSTINRLCGSGMDALGTAARAIKSGETQLMIAGGVES 119 G N+AR ++LLAGLP + G TINR C SG+ A+ AA I+ GE +MIA G ES Sbjct: 65 EGAQGLNMARNAVLLAGLPNTIGGVTINRYCASGITAIAMAADRIRVGEADVMIAAGAES 124 Query: 120 MTRAPFVMGKADSAFSRQAAIQDTTIGWRFVNALMKQKYGVDAMPETAENVAVDFKVSRQ 179 M+ P +MG S A +D +G YG M TAE VA +KVSR+ Sbjct: 125 MSMVP-MMGFHPSI--NINAFKDENVG---------MAYG---MGLTAEKVAQQWKVSRE 169 Query: 180 DQDQFAVRSQAKAAAAQANGTLAQEIVPVVIPQKKGD---------PITVTQDEHPRATS 230 QD+F++ S KA AAQ G A E+ I ++ + TV+ DE PRA S Sbjct: 170 AQDEFSLASHQKAIAAQEAGEFADEMTSFEIVERFPNLATGEIDVKTRTVSLDEGPRADS 229 Query: 231 -MEALARLKGVVKPDGTVTAGNASGVNDGACALLLASAEAVEKYQLKPRARILGMATAGV 289 + ALA+LK V G+VTAGN+S +DGA AL++ S + ++++ L P AR + A GV Sbjct: 230 NLAALAKLKPVFAAKGSVTAGNSSQTSDGAGALIIVSEKILKQFNLTPLARFVSFAVRGV 289 Query: 290 APRIMGMGPAPASKKVLAQLGMSIDQMDVIELNEAFASQGLAVLRELGVADDDARVNPNG 349 P IMG+GP A L G++ DQ+D IELNEAFA+Q LAV+ +LG+ D ++VNP G Sbjct: 290 PPEIMGIGPKEAIPAALKAGGLTQDQIDWIELNEAFAAQALAVIGDLGL--DPSKVNPMG 347 Query: 350 GAIALGHPLGMSGARLVTTATYQLERTGGRYALCTMCIGVGQGIAMVIERV 400 GAIALGHPLG +GA T + L R +Y + TMC+G G G A + ERV Sbjct: 348 GAIALGHPLGATGAIRAATTIHALRRKNLKYGMVTMCVGTGMGAAGIFERV 398 >gi|300310259|ref|YP_003774351.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 236 bits (603), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 151/400 (37%), Positives = 222/400 (55%), Gaps = 12/400 (3%) Query: 4 VFICDAIRTPIGRYGGALKDVRADDLGAVPLRALMERN--PQVDWKAVDDVIFGCANQAG 61 V I A RT +G + GAL D+ A LGAV + A ++R ++ V GC QAG Sbjct: 6 VVIVSAARTAMGSFQGALADLPAPHLGAVAISAALQRAQLSAAQIAQIEQVWMGCVLQAG 65 Query: 62 EDNRNVARMSLLLAGLPQEVPGSTINRLCGSGMDALGTAARAIKSGETQLMIAGGVESMT 121 + AR + L AGLPQ V +T+N++CGS M A+ +I +G +++AGG+ESM+ Sbjct: 66 L-GQAPARQAALRAGLPQTVACATLNKVCGSAMQAVMLGHDSILAGSASMVVAGGMESMS 124 Query: 122 RAPFVMGKADSAFSRQAAIQDTTIGWRFVNAL---MKQKYGVDAMPETAENVAVDFKVSR 178 AP+++ KA + D + F++ L +Y M AE+ A +F +R Sbjct: 125 NAPYLLPKARRGYRLG---HDRLLDHMFLDGLEDAYSDQYRGRLMGTFAEDCASEFGFTR 181 Query: 179 QDQDQFAVRSQAKAAAAQANGTLAQEIVPVVIPQKKGDPITVTQDEHPRATSMEALARLK 238 QD FAV+S +A A + G E+VPV + KKG + ++QDE P A ++E +A LK Sbjct: 182 AQQDAFAVQSTLRARQAISGGGFDWEVVPVDVAGKKGS-VVISQDEGPMAVNLERIATLK 240 Query: 239 GVVKPDGTVTAGNASGVNDGACALLLASAEAVEKYQLKPRARILGMATAGVAPRIMGMGP 298 DGTVTA N+S ++DGA ALLL A K L P ARILG A+ AP P Sbjct: 241 PAFSVDGTVTAANSSSISDGAAALLLMRESAALKQGLTPLARILGHASYAGAPEKFPTAP 300 Query: 299 APASKKVLAQLGMSIDQMDVIELNEAFASQGLAVLRELGVADDDARVNPNGGAIALGHPL 358 +K+ A+ G+ D+ E+NEAFA +A REL + D ++N +GGA ALGHP+ Sbjct: 301 IGVLRKIFAKTGLDAASTDLFEINEAFAVVPMAASRELDI--DMEKINVHGGACALGHPI 358 Query: 359 GMSGARLVTTATYQLERTGGRYALCTMCIGVGQGIAMVIE 398 G SGAR++ + L+ G + + ++CIG G+ A+ +E Sbjct: 359 GASGARIIVSLLGALKARGLKTGIASLCIGGGEATAIALE 398 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,230,542 Number of extensions: 51688 Number of successful extensions: 198 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 181 Number of HSP's successfully gapped: 6 Length of query: 400 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 313 Effective length of database: 1,207,925 Effective search space: 378080525 Effective search space used: 378080525 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)