BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3886.p (257 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC t... 478 e-136 gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC t... 184 6e-48 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 183 1e-47 gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPa... 177 5e-46 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 173 2e-44 >gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 478 bits (1230), Expect = e-136, Method: Compositional matrix adjust. Identities = 235/257 (91%), Positives = 247/257 (96%) Query: 1 MNPTSSTADTTLRTENLSKRWGSFVANSEVSLTFTPGARHALIGPNGAGKTTFINLLTGG 60 M+ + ADTTLRTE LSKRWGSFVANS++SLTF PGARHALIGPNGAGKTTFINLLTGG Sbjct: 1 MSKQAHQADTTLRTEGLSKRWGSFVANSDISLTFAPGARHALIGPNGAGKTTFINLLTGG 60 Query: 61 FAPSSGKVWFGGEDITALAQHERVKRGMTRTFQINTLFAGLTVLESVVLAIQERRGLQYK 120 FAPSSG+VWFGGEDITAL QH RVKRGMTRTFQINTLFAGLTVLESVVLAIQERRGLQYK Sbjct: 61 FAPSSGRVWFGGEDITALPQHARVKRGMTRTFQINTLFAGLTVLESVVLAIQERRGLQYK 120 Query: 121 WYQTVASQSEVVDEAMALLASLRLEQEANSITRSLAYGKQRLVEIALALATRPKVLLLDE 180 WYQTVASQ+EVVDEAMALLASL+L QEANS+TR+LAYGKQRLVEIALALAT+PKVLLLDE Sbjct: 121 WYQTVASQTEVVDEAMALLASLKLAQEANSLTRNLAYGKQRLVEIALALATQPKVLLLDE 180 Query: 181 PAAGIPAAESRELFEVIAQLPRDVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEI 240 PAAGIP+AESRELFEVIAQLPR+VTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEI Sbjct: 181 PAAGIPSAESRELFEVIAQLPREVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEI 240 Query: 241 AADQRVKEVYLGEAEHA 257 AAD RVKEVYLGEAEHA Sbjct: 241 AADPRVKEVYLGEAEHA 257 >gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 184 bits (467), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 97/245 (39%), Positives = 153/245 (62%), Gaps = 7/245 (2%) Query: 12 LRTENLSKRWGSFVANSEVSLTFTPGARHALIGPNGAGKTTFINLLTGGFAPSSGKVWFG 71 L+ N++KR+G F A + ++L G H++IGPNGAGKTT + LTG + G + Sbjct: 6 LQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSILVE 65 Query: 72 GEDITALAQHERVKRGMTRTFQINTLFAGLTVLESVVLAIQERRGLQ----YKWYQTVAS 127 GE++ L + RV++G+ R+FQ+ +LF L+V E++ LA Q R L +K + ++ Sbjct: 66 GEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAPLAALNPWKRAEQFSA 125 Query: 128 QSEVVDEAMALLASLRLEQEANSITRSLAYGKQRLVEIALALATRPKVLLLDEPAAGIPA 187 + DE LLA L L+ A L++G+QR +E+ +A+A RPKV+ LDEP +G+ Sbjct: 126 ACALADE---LLARLSLQAVAQRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGMGI 182 Query: 188 AESRELFEVIAQLPRDVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEIAADQRVK 247 + E+ ++I L RD T+V IEH+M +V ++RITV+ G++L +G PAEI +D+RV+ Sbjct: 183 DDIAEMKQLIHGLRRDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDERVR 242 Query: 248 EVYLG 252 YLG Sbjct: 243 RAYLG 247 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 183 bits (464), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 106/252 (42%), Positives = 149/252 (59%), Gaps = 10/252 (3%) Query: 12 LRTENLSKRWGSFVANSEVSLTFTPGARHALIGPNGAGKTTFINLLTGGFAPSSGKVWFG 71 L+ ++SK +G V+ G LIGPNGAGKTT NL+TG SSG + F Sbjct: 3 LQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRFN 62 Query: 72 GEDITALAQHERVKRGMTRTFQINTLFAGLTVLESVVLAIQERRGLQYKWYQTV------ 125 +DI A+A H+ +RG+ RTFQ +F +T+LE+VV+ + + L Y + Sbjct: 63 DDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDH--LNYGVASMLLNLGGF 120 Query: 126 -ASQSEVVDEAMALLASLRLEQEANSITRSLAYGKQRLVEIALALATRPKVLLLDEPAAG 184 ++ E + A+ LL+ +RL+ +A+ + SL+YG+QR +E A ALAT+PK+LLLDEP AG Sbjct: 121 RNAEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAG 180 Query: 185 IPAAESRELF-EVIAQLPRDVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEIAAD 243 + AE EL E++ R TI IEHDM V ERI VL GK++ EGTP +I + Sbjct: 181 MNPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNN 240 Query: 244 QRVKEVYLGEAE 255 Q V E YLG+ E Sbjct: 241 QEVIEAYLGKEE 252 >gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 177 bits (450), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 93/244 (38%), Positives = 148/244 (60%) Query: 9 DTTLRTENLSKRWGSFVANSEVSLTFTPGARHALIGPNGAGKTTFINLLTGGFAPSSGKV 68 D L T NL+K + F A S V+L G HALIGPNGAGKTT NLLT P+SG++ Sbjct: 3 DVILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQI 62 Query: 69 WFGGEDITALAQHERVKRGMTRTFQINTLFAGLTVLESVVLAIQERRGLQYKWYQTVASQ 128 F G DIT A + ++G+ R+FQI+ +F ++VLE+V + +Q + G + +++ S Sbjct: 63 LFNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQRKLGTSFHFWKNGESL 122 Query: 129 SEVVDEAMALLASLRLEQEANSITRSLAYGKQRLVEIALALATRPKVLLLDEPAAGIPAA 188 ++ + AM LL + L A++ T L YG++R +EIA LA P+++LLDEP G+ Sbjct: 123 KQLDERAMQLLEEVDLTSFAHTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGMGHE 182 Query: 189 ESRELFEVIAQLPRDVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEIAADQRVKE 248 + + +I ++ TI+ +EH+M ++ +RI+VL G +L EG+ E++ + +V E Sbjct: 183 DVDRVTALIKKVSAGRTILMVEHNMSVIAGICDRISVLQRGALLAEGSYEEVSRNPQVME 242 Query: 249 VYLG 252 Y+G Sbjct: 243 AYMG 246 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 173 bits (438), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 101/256 (39%), Positives = 152/256 (59%), Gaps = 7/256 (2%) Query: 5 SSTADTTLRTENLSKRWGSFVANSEVSLTFTPGARHALIGPNGAGKTTFINLLTGGFAPS 64 +++ T L NLS R+G +A VSL A+IGPNGAGKTT N ++G + P+ Sbjct: 2 NASVKTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRPT 61 Query: 65 SGKVWFGGEDITALAQHERVKRGMTRTFQINTLFAGLTVLESVVLAIQER--RGLQYKWY 122 SG++ G I H+ ++G+ RTFQ LF +TV+E++++A ++ L Sbjct: 62 SGEIMLDGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLL 121 Query: 123 QTVA---SQSEVVDEAMALLASLRLEQEANSITRSLAYGKQRLVEIALALATRPKVLLLD 179 +T A S+ E + A L L L AN +L+YG QR VEIA + T+P++LLLD Sbjct: 122 KTPAYRKSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLD 181 Query: 180 EPAAGIPAAESRELFEVIAQLPRD--VTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTP 237 EPAAG+ E +EL ++I +L R+ V ++ IEHDM L+ ++RI V+ GK +V GTP Sbjct: 182 EPAAGLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTP 241 Query: 238 AEIAADQRVKEVYLGE 253 ++ +D+RV + YLGE Sbjct: 242 EQVRSDERVIKAYLGE 257 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 774,906 Number of extensions: 32383 Number of successful extensions: 545 Number of sequences better than 1.0e-08: 124 Number of HSP's gapped: 341 Number of HSP's successfully gapped: 131 Length of query: 257 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 174 Effective length of database: 1,226,865 Effective search space: 213474510 Effective search space used: 213474510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)