BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3885.p (233 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313283|ref|YP_003777375.1| branched-chain amino acid ABC t... 444 e-126 gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t... 190 9e-50 gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPa... 188 3e-49 gi|300312951|ref|YP_003777043.1| amino acid ABC transporter ATPa... 187 5e-49 gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC t... 169 2e-43 >gi|300313283|ref|YP_003777375.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 444 bits (1141), Expect = e-126, Method: Compositional matrix adjust. Identities = 221/233 (94%), Positives = 229/233 (98%) Query: 1 MPELLALDKVTAGYGESIVLEDVSFVMHEGESLALLGRNGVGKTSLLITLMGLTRMHGGS 60 MPELLALD+V+AGYG+SIVLEDVSF M EGESLALLGRNGVGKTSLLITLMGLTR+HGGS Sbjct: 1 MPELLALDRVSAGYGQSIVLEDVSFTMQEGESLALLGRNGVGKTSLLITLMGLTRLHGGS 60 Query: 61 IRWRGGDIVRVPTHKRAHAGLGWVPQERFMFPSLSVEEHLTVVERGGKWDLKKIYEIFPR 120 IRWRGGDI RV THKRAHAGLGWVPQERFMFPSLSVEEHLTVVERGGKWDL+KIY+IFPR Sbjct: 61 IRWRGGDIARVATHKRAHAGLGWVPQERFMFPSLSVEEHLTVVERGGKWDLQKIYQIFPR 120 Query: 121 LHERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRRLVSD 180 LHERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRRLVS+ Sbjct: 121 LHERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRRLVSE 180 Query: 181 EGMSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLADGEKLDRLVAVA 233 EGMSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLADG+KLDRLVAVA Sbjct: 181 EGMSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLADGDKLDRLVAVA 233 >gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 190 bits (482), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 105/230 (45%), Positives = 150/230 (65%), Gaps = 2/230 (0%) Query: 4 LLALDKVTAGYGESIVLEDVSFVMHEGESLALLGRNGVGKTSLLITLMGLTRMHGGSIRW 63 +L ++ V YG+S +L+ VS + GE + LLGRNG GKT+ L +++G+ G + + Sbjct: 2 ILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPVQGRVLF 61 Query: 64 RGGDIVRVPTHKRAHAGLGWVPQERFMFPSLSVEEHLTVVERG-GKWDLKKIYEIFPRLH 122 G I +P++K A G+ VP+ R +F L+VEE+LT+ R W L++IY IFPRL Sbjct: 62 EGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTMAARKESAWGLEEIYAIFPRLK 121 Query: 123 ERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRRLVSDEG 182 ERR N G QLSGGEQQMLAIARALM P +L+LDEP+EGLAP+IV E++ IR+ + G Sbjct: 122 ERRKNGGGQLSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIRQ-IKATG 180 Query: 183 MSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLADGEKLDRLVAV 232 MS+I+VEQ+ + L R ++++GRIV+ + LAD DR + V Sbjct: 181 MSIILVEQNLEVCTQLADRHYIVEQGRIVYHGSNAEFLADEGVKDRYLGV 230 >gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 188 bits (477), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 103/235 (43%), Positives = 152/235 (64%), Gaps = 5/235 (2%) Query: 2 PELLALDKVTAGYGESIVLEDVSFVMHEGESLALLGRNGVGKTSLLITLMGLTRMHGGSI 61 P +L + + + YGES +L +V+ +H+GE + LLGRNG G+T+ L ++MGL GSI Sbjct: 9 PLVLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGTRKGSI 68 Query: 62 RWRGGDIVRVPTHKRAHAGLGWVPQERFMFPSLSVEEHLTVVERGGKWD----LKKIYEI 117 + G + + + THK AH G+G+ P+ER +F SLS EE+L + K D + +IYE+ Sbjct: 69 KINGQETINLATHKIAHHGVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGMSIDEIYEM 128 Query: 118 FPRLHERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRRL 177 FP L ERR++ G +LSGGEQQMLA+AR L +LLLDE EGLAP+IVQ L ++I L Sbjct: 129 FPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARMITTL 188 Query: 178 VSDEGMSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLADGEKLDRLVAV 232 + +G ++++VEQ+ R A L R V++ G+IV + S L A + L+ L+ V Sbjct: 189 KA-KGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQTLNELLGV 242 >gi|300312951|ref|YP_003777043.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 236 Score = 187 bits (476), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 102/237 (43%), Positives = 151/237 (63%), Gaps = 6/237 (2%) Query: 1 MPELLALDKVTAGYGESIVLEDVSFVMHEGESLALLGRNGVGKTSLLITLMGLTRMHGGS 60 M LL ++ +T GYG S VL + + EGE + LLGRNG+GKT+ L T++GL R GG Sbjct: 1 MSALLEVEGLTGGYGASQVLFGIDMQVREGEVVTLLGRNGMGKTTTLRTILGLNRPTGGV 60 Query: 61 IRWRGGDIVRVPTHKRAHAGLGWVPQERFMFPSLSVEEHLTV--VERGGK---WDLKKIY 115 +R+RG I A G+ VP+ R +F +LSVEE+L+ R G+ W L+KIY Sbjct: 61 VRFRGEAIHSASADAIARRGMAIVPEGRQIFKNLSVEENLSAFAARRNGRDNPWTLEKIY 120 Query: 116 EIFPRLHERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIR 175 + FPRL ERRHN G QLSGGEQQMLAI RALM +P +L+LDE EGLAP++ +E+ ++ Sbjct: 121 QQFPRLKERRHNGGGQLSGGEQQMLAIGRALMTNPHLLILDEATEGLAPLVREEIWSCLK 180 Query: 176 RLVSDEGMSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLADGEKLDRLVAV 232 L + G+++IV++++ + + + +L++G++V DS L E D+ ++V Sbjct: 181 AL-REYGLTIIVIDKYIKRLIGFADQHTILEKGKVVWQGDSAQLSVQTELWDQYLSV 236 >gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 238 Score = 169 bits (427), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 95/224 (42%), Positives = 141/224 (62%), Gaps = 7/224 (3%) Query: 4 LLALDKVTAGYGESIVLEDVSFVMHEGESLALLGRNGVGKTSLLITLMGLTRMHGGSIRW 63 LL++ + AGYG S VL V + GE +++LGRNG G+++LL LMGL G R+ Sbjct: 7 LLSVTGLQAGYGHSRVLHGVDLTVQRGEIVSILGRNGAGRSTLLKALMGLLPSRG-DCRF 65 Query: 64 RGGDIVRVPTHKRAHAGLGWVPQERFMFPSLSVEEHLTVVERGGK-----WDLKKIYEIF 118 G DI +PTH A G+G+VP+ R +FP+LSV ++L + + G W I+ +F Sbjct: 66 EGRDISGLPTHAIARLGMGYVPESREVFPTLSVAQNLLLGRKPGPQPGRGWCEDDIHALF 125 Query: 119 PRLHERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRRLV 178 P L++RR LSGGEQQMLA+ RAL+ +PS+LL+DEP EGLAP +V+++ + ++ L Sbjct: 126 PALYKRRQVAAAALSGGEQQMLALGRALLGNPSLLLVDEPTEGLAPQMVEQVARALQELR 185 Query: 179 SDEGMSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLAD 222 + G++V++VEQ +AL L+QR V+ RG +V L A Sbjct: 186 T-RGVAVLLVEQKQALALELSQRVYVMGRGEMVFEGTPTGLSAQ 228 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.138 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 750,870 Number of extensions: 32192 Number of successful extensions: 462 Number of sequences better than 1.0e-08: 121 Number of HSP's gapped: 303 Number of HSP's successfully gapped: 134 Length of query: 233 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 151 Effective length of database: 1,231,600 Effective search space: 185971600 Effective search space used: 185971600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)