BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3883.p
         (342 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313279|ref|YP_003777371.1| vanillate O-demethylase oxygena...   199   3e-52
gi|300309801|ref|YP_003773893.1| phenylpropionate dioxygenase [H...    92   5e-20

>gi|300313279|ref|YP_003777371.1| vanillate O-demethylase oxygenase
           subunit oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 349

 Score =  199 bits (506), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 120/344 (34%), Positives = 178/344 (51%), Gaps = 14/344 (4%)

Query: 1   MFVLNQWYVAGFSWELQERPLARTLLSQPVVLFRTGTGEVAALEDRCCHRSLPLSCGTVE 60
           MF  N WYVA    E+  +PL R +  + +V +R   G+VAA+ED C HR  PLS G V 
Sbjct: 1   MFPKNAWYVACTPDEIDSKPLGRQICGEKIVFYRGAGGKVAAVEDFCPHRGAPLSLGFVR 60

Query: 61  EQGLRCGYHGLLFAPGGQCLEIPGQARVPAKACVKSFPVAVRNQVIWIWMGEQQDLPTPA 120
           E  L CGYHGL     G+ + +PGQ RV    C++S+PV  R   IW+W G+++    PA
Sbjct: 61  EGQLVCGYHGLEMGCDGKAISMPGQ-RVRGFPCIRSYPVEERYGFIWVWPGDKEQA-DPA 118

Query: 121 TPPEIAAHDDPRYRFKGGVFHYEAPYQLIHDNLLDLSHVGYVHSKTIGGNAKTHMEAPTR 180
               +   D+P + + GG++H    Y+L+ DNL+DL+H  YVH+ +IG   K   EAP  
Sbjct: 119 QIHHLEWADNPEWAYGGGLYHINCDYRLMIDNLMDLTHETYVHASSIG--QKEIDEAPVN 176

Query: 181 VSSEGQHVRVVRHMLNSLPPATYTAAWPFRER-------IDRWQEIDFH-VSHLNIFTGA 232
              EG+ V   R M N +PP  +  A   R         +DRWQ   F   SH+ I  G 
Sbjct: 177 TRVEGEQVITSRFMDNIMPPPFWRMA--LRGNGLADDVPVDRWQICRFSPPSHVMIEVGV 234

Query: 233 VDAGSESVDNPARGGFHMRGFHGITPETKHSSHYFWTMACSSHPDMPDNLEDVYQQTAAT 292
             AG    +              ITPET+ S  YFW MA    P   +  + + +     
Sbjct: 235 AHAGHGGYEAGPEHKASSIVVDFITPETETSHWYFWGMARHFRPQDKELTDTIREGQGKI 294

Query: 293 FEEDRIIIEAQYRNMQQFSGRDMVDIHVDAGANRARRIIDQLIS 336
           F EDR ++E Q  N+ +   R ++ +++DAG  ++R+++D+ ++
Sbjct: 295 FGEDREMLELQQANLLRHPERRLLALNIDAGGVQSRKVLDKWLA 338


>gi|300309801|ref|YP_003773893.1| phenylpropionate dioxygenase
           [Herbaspirillum seropedicae SmR1]
          Length = 343

 Score = 92.4 bits (228), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 82/166 (49%), Gaps = 10/166 (6%)

Query: 7   WYVAGFSWELQERPLARTLLSQPVVLFRTGTGEVAALEDRCCHRSLPLSCGTVEEQGLRC 66
           WY      +L++ P   TLL + +V++    G  AAL+DRCCHR+  LS G VE   + C
Sbjct: 13  WYALMPIAQLRQGPQPFTLLGEKLVVWLKEDGAPAALQDRCCHRTARLSKGFVENGNIVC 72

Query: 67  GYHGLLFAPGGQCLEIPGQA--RVPAKACVKSFPVAVRNQVIWIWMGEQ-QDLPTPATPP 123
           GYHG  F   G C+ +P  A   VPA ACVKS+    R   +W+ + E  +D+      P
Sbjct: 73  GYHGWTFNGEGACVRVPQNADGSVPAGACVKSYFCKERYGYVWVALEEPLRDI------P 126

Query: 124 EIAAHDDPRYRFKGGVFH-YEAPYQLIHDNLLDLSHVGYVHSKTIG 168
           E      P YR     +  +E     + +N  D SH  YVH  T G
Sbjct: 127 EFPEEGAPGYRRIFQFYERWETSALRMMENSFDNSHFSYVHRATFG 172


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,224,002
Number of extensions: 55103
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 2
Length of query: 342
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 256
Effective length of database: 1,212,660
Effective search space: 310440960
Effective search space used: 310440960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)