BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3875.p
         (260 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313676|ref|YP_003777768.1| NADPH-quinone reductase [Herbas...    62   7e-11

>gi|300313676|ref|YP_003777768.1| NADPH-quinone reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 173

 Score = 61.6 bits (148), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 13/99 (13%)

Query: 80  DIAREQEKLRWADTVILQFPLWWFSLPAILKGWVERVYAYGLAYGVGEHSDTHWGDRYGE 139
           D+  EQ+ L   + +++Q P+ W+S+PA+ K W++ V   G A+G G H+          
Sbjct: 47  DVEHEQQLLGTVELIVMQHPIHWYSMPALQKQWLDSVLTRGWAFGHGGHA---------- 96

Query: 140 GRFAGKRAMLVVTTGGWESHYAPRGINGP-IDDILFPIQ 177
               GKR  LV TTGG E+ Y P+G +G    D L P Q
Sbjct: 97  --LHGKRFWLVATTGGEEAAYRPQGRHGHRFADFLPPYQ 133


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 933,247
Number of extensions: 41947
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 177
Effective length of database: 1,226,865
Effective search space: 217155105
Effective search space used: 217155105
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)