BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3870.p
         (455 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313275|ref|YP_003777367.1| 3-carboxy-cis,cis-muconate cycl...   761   0.0  

>gi|300313275|ref|YP_003777367.1| 3-carboxy-cis,cis-muconate
           cycloisomerase [Herbaspirillum seropedicae SmR1]
          Length = 455

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/455 (90%), Positives = 436/455 (95%)

Query: 1   MSVSIFDSFLTTSEMIAVFDDQAVVQAMLRFEQVLAEAEAAEGIIPEAAARAIASVCRAP 60
           MSVSIFDSFLTTSEMIAVFDDQAVVQAMLRFEQVLAEA+AAEG+IP+AAARAIASVCRAP
Sbjct: 1   MSVSIFDSFLTTSEMIAVFDDQAVVQAMLRFEQVLAEAQAAEGVIPDAAARAIASVCRAP 60

Query: 61  LYDINALIVAGRRAGALAIPLVKELQRTVALYSEQAATHVHWGSTSQDVLDTAMVLVTRD 120
           LYDI ALIVAGRRAGALAIPLVKELQRTVALYSE+AATHVHWGSTSQDVLDTAMVLVTR+
Sbjct: 61  LYDIPALIVAGRRAGALAIPLVKELQRTVALYSEEAATHVHWGSTSQDVLDTAMVLVTRE 120

Query: 121 ALRLVDDELAQLSGRLLELAQSHLATPVLARTLMQPAQVTSLGLKFCNWAAPLLRARAQL 180
           ALRLV+ EL QLS RLL+LAQSHL TPVLARTLMQPAQVTSLGLKFCNWAAPLLR+RAQL
Sbjct: 121 ALRLVEGELEQLSRRLLDLAQSHLDTPVLARTLMQPAQVTSLGLKFCNWAAPLLRSRAQL 180

Query: 181 QALAERALQLQLGGAVGTLSVLGEKGPAVAARMAAALELQAPQAAWHTQRDEWIRVGTEM 240
           QALAERALQLQLGGAVGTL+VLGEKGPAVAARMAAALEL+ P+AAWHTQRD+WIR+G EM
Sbjct: 181 QALAERALQLQLGGAVGTLTVLGEKGPAVAARMAAALELKTPEAAWHTQRDQWIRLGAEM 240

Query: 241 AVLAGSLGKIATDLSLMAQGEIAELAEPSGNGRGGSSAMPHKRNPVSSMIALAAAARAPQ 300
           AVLAGSLGKIATDLSLMAQGEIAELAEPSGNGRGGSSAMPHKRNPVSSMIALAAAARAPQ
Sbjct: 241 AVLAGSLGKIATDLSLMAQGEIAELAEPSGNGRGGSSAMPHKRNPVSSMIALAAAARAPQ 300

Query: 301 QAATLLAAMSQQHERGLGNWQAELAEWPALFLGVHGALRALNDAFAGLVIDAARMLRNID 360
           QAA LLAAMSQQHERGLGNWQAELAEWPALFLGVHGALRALNDAFAGLVIDA RMLRNID
Sbjct: 301 QAAALLAAMSQQHERGLGNWQAELAEWPALFLGVHGALRALNDAFAGLVIDAPRMLRNID 360

Query: 361 ALQGLVFAESASIALAGVIGRPRAHALLEQLTRKTVAEGTQLVDMLVQAVQADAQLGREL 420
           ALQGLVFAESASIALAGVIGRPRAH+LLEQLTRK VA+G QLVD+LV AVQADAQL +E+
Sbjct: 361 ALQGLVFAESASIALAGVIGRPRAHSLLEQLTRKAVADGAQLVDVLVDAVQADAQLRKEI 420

Query: 421 DLDMLRALFDPVEATLPARRIAERQLDTWRSVLAQ 455
           DL MLR LFDPV+AT PARRIAE QL+  R++LAQ
Sbjct: 421 DLPMLRGLFDPVQATRPARRIAEGQLEHLRTLLAQ 455


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.130    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,099,047
Number of extensions: 38887
Number of successful extensions: 194
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 367
Effective length of database: 1,203,190
Effective search space: 441570730
Effective search space used: 441570730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)