BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3864.p
         (286 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313269|ref|YP_003777361.1| CAAX protease family protein [H...   334   5e-93

>gi|300313269|ref|YP_003777361.1| CAAX protease family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 342

 Score =  334 bits (857), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 194/286 (67%), Positives = 229/286 (80%), Gaps = 1/286 (0%)

Query: 1   MSSTYLLMLAICAVWLPPLALSRRLHLALWLPLLVLAVVTGVVDGRIQAMGVIGLLGLGV 60
           M S  +LMLAICAVWLP L L+R L +  W+PLL+LAV  G +DG+++A+ V+G++ LG 
Sbjct: 58  MPSFIVLMLAICAVWLPALRLTR-LSVPPWMPLLLLAVTMGWLDGQLKAVAVLGIVVLGT 116

Query: 61  AAWGAARASVSRQRRCLLILALLMSLLLALHRWPGFINVQVLPRQAITPDALPFLLYANF 120
            AWG+  A  + QRRCLL+LALL++LL+ALHRWPGFIN  V+P   IT DA PF+LYANF
Sbjct: 117 LAWGSTHALHAWQRRCLLMLALLLALLMALHRWPGFINTLVVPPTHITADARPFMLYANF 176

Query: 121 DKGAAGLLLLALLVPRCQRLREWSTTLRLTLLPGFVTIATVMLLGWLIGMVRPEWKWPPF 180
           DKG AGLLLLALL PRC   REW   LRLTLLPG VTIA VM LGWLIG++ P  KWP F
Sbjct: 177 DKGVAGLLLLALLAPRCHAWREWQGALRLTLLPGLVTIALVMGLGWLIGLISPNLKWPGF 236

Query: 181 AGIFLAINLLLTVVAEEAFFRGLIQYRMQAALQHLRAGDLLAVLVSALLFGAAHLGGGLG 240
              FLAINLLLTVVAEEAFFRG++Q+R+Q A Q LR G +LA+++SA+LFGAAHLGGGL 
Sbjct: 237 TPPFLAINLLLTVVAEEAFFRGVLQHRLQQAWQGLRGGAVLALILSAVLFGAAHLGGGLA 296

Query: 241 YAALATVAGLGYAWVFRRSARIESAIALHFTLNAVHFIGFTYPALA 286
           YAALATVAG GY WVF+R+ RIE+AI LHF LNAVHFIGFTYPALA
Sbjct: 297 YAALATVAGAGYGWVFQRTGRIEAAIVLHFALNAVHFIGFTYPALA 342


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.332    0.143    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 577,497
Number of extensions: 16729
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,222,130
Effective search space: 246870260
Effective search space used: 246870260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 130 (54.7 bits)