BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3862.p (152 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313267|ref|YP_003777359.1| response regulator transcriptio... 250 3e-68 gi|300312512|ref|YP_003776604.1| sensory transduction regulatory... 87 4e-19 gi|300312037|ref|YP_003776129.1| sensory transduction regulatory... 85 3e-18 gi|300312101|ref|YP_003776193.1| hypothetical protein Hsero_2790... 58 4e-10 >gi|300313267|ref|YP_003777359.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 188 Score = 250 bits (639), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 122/150 (81%), Positives = 135/150 (90%) Query: 1 MNFPSIVMIDPSQEAAELARFALWRAGLHCVFRACPDMATARRCLLQGRRSGDVEPPSLI 60 M+FPSI+MIDPS EAAELARFALWRAGLHC FRAC D+ATARRCLL GRRSGD PSLI Sbjct: 13 MSFPSIIMIDPSPEAAELARFALWRAGLHCAFRACQDVATARRCLLSGRRSGDCATPSLI 72 Query: 61 LLESEMDCGDGLELLRELRASKHLADAPVVVFPSHDLEGEREALAAGASQYLPKPIDGEH 120 LLES+M+CGDGLELLRELRAS HLA+APVVVFPSHD EGEREAL AGA+ YLPKPIDGE Sbjct: 73 LLESDMECGDGLELLRELRASSHLAEAPVVVFPSHDTEGEREALDAGATAYLPKPIDGER 132 Query: 121 YARCVVEIVERWCDVAQAAAPLPEGVVREA 150 YARCVVE+VERWCDV++AAAP+ E + RE+ Sbjct: 133 YARCVVEMVERWCDVSEAAAPVQEALTRES 162 >gi|300312512|ref|YP_003776604.1| sensory transduction regulatory protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 87.4 bits (215), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 53/128 (41%), Positives = 69/128 (53%), Gaps = 1/128 (0%) Query: 1 MNFPSIVMIDPSQEAAELARFALWRAGLHCVFRACPDMATARRCLLQGRRSGDVEPPSLI 60 M P I+MI+ + EA ELARFALWR+ HCV + + A LL R D P LI Sbjct: 1 MRPPIILMIESNGEAVELARFALWRSNFHCVLQWYDEADAAIDGLLHRHRLDDARLPDLI 60 Query: 61 LLESEMDCGDGLELLRELRASKHLADAPVVVFPSHDLEGER-EALAAGASQYLPKPIDGE 119 LL+ M +G++ + ++A + PVVVFP D E + L AGAS YL KP Sbjct: 61 LLDPGMMENNGVDFILAMKAGRDTRSIPVVVFPDSDYPPEMPDLLEAGASAYLLKPETAP 120 Query: 120 HYARCVVE 127 Y + VVE Sbjct: 121 QYMQAVVE 128 >gi|300312037|ref|YP_003776129.1| sensory transduction regulatory protein [Herbaspirillum seropedicae SmR1] Length = 140 Score = 84.7 bits (208), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/134 (44%), Positives = 74/134 (55%), Gaps = 2/134 (1%) Query: 1 MNFPSIVMIDPSQEAAELARFALWRAGLHCVFRACPDMATARRCLLQGR-RSGDVEPPSL 59 M+ PSI+M+DPS E+ ELARF LWR L C F D A + L + R+ + P L Sbjct: 1 MSRPSILMVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADLPCL 60 Query: 60 ILLESEMDCGDGLELLRELRASKHLADAPVVVF-PSHDLEGEREALAAGASQYLPKPIDG 118 ILLE + +GLELL LRA H PVV+F S D A AAGA+ YL KP+D Sbjct: 61 ILLEPRLPRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDA 120 Query: 119 EHYARCVVEIVERW 132 + V + V RW Sbjct: 121 RAFMELVSQTVRRW 134 >gi|300312101|ref|YP_003776193.1| hypothetical protein Hsero_2790 [Herbaspirillum seropedicae SmR1] Length = 144 Score = 57.8 bits (138), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 58/131 (44%), Gaps = 1/131 (0%) Query: 2 NFPSIVMIDPSQEAAELARFALWRAGLHCVFRACPDMATARRCLLQGRRSGDVEPPSLIL 61 P I++ID +A E ARFALWR+ L C D A LL + P+LIL Sbjct: 6 QLPRILIIDADLDAIETARFALWRSHLSCRIEWFDDAELANASLLTQALCQLRDQPTLIL 65 Query: 62 LESEMDCG-DGLELLRELRASKHLADAPVVVFPSHDLEGEREALAAGASQYLPKPIDGEH 120 L+ G +G ELLR L LA P+V+F + + + A Y KP Sbjct: 66 LDPRNFRGTEGYELLRTLCVYPQLAQIPLVLFTASPISSDFAAEQDNRIWYAAKPARPAD 125 Query: 121 YARCVVEIVER 131 Y V V++ Sbjct: 126 YMELVTRCVQQ 136 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 448,119 Number of extensions: 16005 Number of successful extensions: 122 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 128 Number of HSP's successfully gapped: 4 Length of query: 152 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 75 Effective length of database: 1,255,275 Effective search space: 94145625 Effective search space used: 94145625 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)