BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3848.p (541 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313253|ref|YP_003777345.1| methyl-accepting chemotaxis I M... 586 e-168 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 423 e-119 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 407 e-114 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 402 e-113 gi|300313049|ref|YP_003777141.1| methyl-accepting chemotaxis I p... 391 e-110 >gi|300313253|ref|YP_003777345.1| methyl-accepting chemotaxis I MCP-I serine chemoreceptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 556 Score = 586 bits (1510), Expect = e-168, Method: Compositional matrix adjust. Identities = 334/554 (60%), Positives = 420/554 (75%), Gaps = 16/554 (2%) Query: 2 FSKLSIRSRLIFVIAFLALLLVASGVLGVISLRSTNAQMGSLYEDRLVALSQLERMSAAL 61 +K SI+ RLI I+FL ++L+ASG++G++SL STN +M SLYEDRLVA + LE++ + L Sbjct: 1 MNKFSIKIRLILAISFLTIMLLASGIVGLVSLHSTNEKMRSLYEDRLVAYAYLEQIESTL 60 Query: 62 DAARNGISTSIVGDS------GDIDANMDKIEKALKANDAVVMKYQQTPLSSEERALLEK 115 ++AR+GI I DS +ID +D + LK + V+ YQ T L+ EE LLE+ Sbjct: 61 ESARSGIYGIITLDSSEGWDPNEIDRRLDLLVNNLKTVEPVIRSYQATYLTPEESTLLER 120 Query: 116 MIAQRQKFVVEGIKPATEALRNRDFQGAIELYGGVMLKLYAEAHATLAQLMDLQRSVGRE 175 ++ QRQ + EG+ PA E+LR R FQGA ++Y G M K + H TL+ L +LQ +VGRE Sbjct: 121 LLKQRQHYADEGVMPAVESLRKRSFQGADDIYSGAMRKQWDAVHQTLSDLKELQINVGRE 180 Query: 176 MHEQAQQRYQTLLVIMGVAMLAGLVVALLMGGLLVRAISRPLQRAVKVAQGVAAGDLTQR 235 ++E QQRY+ L+++ +AM AGL+VA+L LLVRAIS+PL +AV +AQ VA GDL+++ Sbjct: 181 LYEHEQQRYRQLILMALLAMGAGLIVAVLEAWLLVRAISQPLTQAVGIAQAVAGGDLSRQ 240 Query: 236 IEVHSQDETGQLMQALQQMNDNLQGIVGQVRLSTDTIATASSEIAHGNLDLSSRTEQQAG 295 IEV SQDETGQLMQAL+ M L IV VR T+TI AS EI GNLDLS+RTEQQAG Sbjct: 241 IEVRSQDETGQLMQALKDMTQRLYQIVAVVRQGTETITMASKEITSGNLDLSARTEQQAG 300 Query: 296 ALEETASAMEQLTSTVRANAENAQQAKQLAHSASEVAVRGGQVVRQVVDTMSSINQSSNK 355 +LEETASAM QLTSTV+ NA+NA QA QLA SASEVAVRGG+VVRQVVDTM+SINQSS + Sbjct: 301 SLEETASAMAQLTSTVKQNADNASQANQLAASASEVAVRGGEVVRQVVDTMTSINQSSTR 360 Query: 356 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVL 415 IVDII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQR+A+AA+EIK L Sbjct: 361 IVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRAASAAREIKDL 420 Query: 416 IDDSVTRVGSGSALVAQAGATIDEVVHSVQQVSAVVTEISAAGQEQSQGIEEVNRAITQM 475 IDDSV +VG GSALV QAG T++EVV +V++V+ +V EIS+A QEQSQGI+E++RAI M Sbjct: 421 IDDSVEKVGKGSALVDQAGKTMEEVVTAVRKVTDMVGEISSASQEQSQGIQEIDRAIVLM 480 Query: 476 DESTQQNAALVEQAAAAAQAMQEQAARLSAAVSVFRLNG----------PALPGPAAGVS 525 D STQQNAALVEQAAAAAQA+++QA +LS A+S FRL G P ++G S Sbjct: 481 DSSTQQNAALVEQAAAAAQALEDQAEKLSLAMSAFRLGGAHSAERLGAPPVAAQSSSGKS 540 Query: 526 AQAAMALPGKEELL 539 ++AA +P LL Sbjct: 541 SEAAERVPASGGLL 554 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 423 bits (1087), Expect = e-119, Method: Compositional matrix adjust. Identities = 234/329 (71%), Positives = 279/329 (84%) Query: 196 LAGLVVALLMGGLLVRAISRPLQRAVKVAQGVAAGDLTQRIEVHSQDETGQLMQALQQMN 255 +A ++ A+++G L+ R+I +PL AV+VA+ VAAGDLT RIE HS+DETGQLMQAL++MN Sbjct: 200 MAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRIEPHSRDETGQLMQALRKMN 259 Query: 256 DNLQGIVGQVRLSTDTIATASSEIAHGNLDLSSRTEQQAGALEETASAMEQLTSTVRANA 315 DNL IV VR T++I TAS EIA GNLDLS+RTEQQAG+LEETASAME++TSTVR NA Sbjct: 260 DNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEETASAMEEMTSTVRQNA 319 Query: 316 ENAQQAKQLAHSASEVAVRGGQVVRQVVDTMSSINQSSNKIVDIISVIDGIAFQTNILAL 375 +NA+QA Q+A SASE+A++GGQ+V +VV TM INQSS KIVDII VIDGIAFQTNILAL Sbjct: 320 DNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDIIGVIDGIAFQTNILAL 379 Query: 376 NAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVLIDDSVTRVGSGSALVAQAGA 435 NAAVEAARAGEQGRGFAVVA+EVRSLAQRSAAAAKEIK LI DSV +V GSALVAQAGA Sbjct: 380 NAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSVGKVEGGSALVAQAGA 439 Query: 436 TIDEVVHSVQQVSAVVTEISAAGQEQSQGIEEVNRAITQMDESTQQNAALVEQAAAAAQA 495 T+++VV SV+ V+ +V EISAA EQS GIEE+NRA+TQMDE TQQNAALVEQAAAAA++ Sbjct: 440 TMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQNAALVEQAAAAAKS 499 Query: 496 MQEQAARLSAAVSVFRLNGPALPGPAAGV 524 MQEQA RL+ ++S+F+L A PAA V Sbjct: 500 MQEQAVRLTQSISIFKLEQGAASIPAAPV 528 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 407 bits (1046), Expect = e-114, Method: Compositional matrix adjust. Identities = 269/538 (50%), Positives = 362/538 (67%), Gaps = 14/538 (2%) Query: 2 FSKLSIRSRLIFVIAFLALLLVASGV--LGVISLRSTNAQMGSLYEDRLVALSQLERMSA 59 F+ LSI +RL IAF L+LV +G+ LG+ L N + + DR ++ + +S Sbjct: 3 FNNLSIATRL--AIAFSILILVIAGIVALGLARLADINKALDLVVNDRYKKIAIINTISG 60 Query: 60 ALD----AARNGISTSIVGDSGDIDANMDKIEKALKANDAVVMKYQQTPLSSEERALLEK 115 +D + RN + ++ D I A IE N + + + + E +A L+K Sbjct: 61 KVDDVAISLRNQL---LMTDPAQIAAEQKTIESLSAENTKLYDELTRLVANPEAKAKLDK 117 Query: 116 MIAQRQKFVVEGIKPATEALRNR-DFQGAIELYGGVMLKLYAEAHATLAQLMDLQRSVGR 174 + R+ + ++ + L++ D AI+L M+ L + L +L D Q+ + Sbjct: 118 VTETRKSYA--ALRKQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSDTQQKLMD 175 Query: 175 EMHEQAQQRYQTLLVIMGVAMLAGLVVALLMGGLLVRAISRPLQRAVKVAQGVAAGDLTQ 234 + +QA+ Y+T +IM +A + A + + R+I+RPL RAV+VA+ VAAGDLT Sbjct: 176 QSVDQAEAAYETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTA 235 Query: 235 RIEVHSQDETGQLMQALQQMNDNLQGIVGQVRLSTDTIATASSEIAHGNLDLSSRTEQQA 294 I HS DETG+L+QAL MN L+ IV +VR TD++ TAS++IA GNLDLSSRTE+QA Sbjct: 236 VIAAHSNDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQA 295 Query: 295 GALEETASAMEQLTSTVRANAENAQQAKQLAHSASEVAVRGGQVVRQVVDTMSSINQSSN 354 ALEETAS++E+LTS+V+ NA++ +++ +LA +AS+VA +GG V+QVV TM +IN SS+ Sbjct: 296 SALEETASSLEELTSSVKQNADHTRKSSELAANASQVANQGGLAVKQVVQTMGAINDSSH 355 Query: 355 KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKV 414 KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA AAKEIK Sbjct: 356 KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKE 415 Query: 415 LIDDSVTRVGSGSALVAQAGATIDEVVHSVQQVSAVVTEISAAGQEQSQGIEEVNRAITQ 474 LI+DSV +V SG+ LVAQAG+T+D VV+S++QVS +V EISAA +EQS GIE+VN+AI Q Sbjct: 416 LINDSVNQVTSGTELVAQAGSTMDAVVNSIEQVSHIVGEISAATREQSDGIEQVNQAIMQ 475 Query: 475 MDESTQQNAALVEQAAAAAQAMQEQAARLSAAVSVFRLNGPALPGPAAGVSAQAAMAL 532 MD +TQQNAALVE+AAAAAQA+Q+QA RL V VFRL+ GPA A A L Sbjct: 476 MDNTTQQNAALVEEAAAAAQALQDQAQRLLDLVGVFRLDEVGGSGPAPSAVAPVAPVL 533 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 402 bits (1032), Expect = e-113, Method: Compositional matrix adjust. Identities = 266/517 (51%), Positives = 351/517 (67%), Gaps = 10/517 (1%) Query: 1 MFSKLSIRSRLIFVIAFLALLLVASGVLGVISLRSTNAQMGSLYEDRLVALSQLERMSAA 60 F+ L I +LI A + +L V G+ + L++ N + + L + + + A+ Sbjct: 3 WFNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQAS 62 Query: 61 LDAARNGISTSIVGDSGDIDANMDKIEKALKANDAVVMK----YQQTPLSSEERALLEKM 116 L R + + + A + KA+K+ ++ K Y+ +EE+ L EK Sbjct: 63 LPRMR---ISELQMVTAATPAEREDALKAIKSRLDILAKQRAAYEAQISEAEEKVLYEKF 119 Query: 117 IAQRQKFVVEGIKPATEALRNRDFQGAIELYGGVMLKLYAEAHATLAQLMDLQRSVGREM 176 ++ + A + ++ + A L+ G K + + +++ + + + Sbjct: 120 SKSFATYLEIDKELARISAEGKE-EEARALFKGDSNKTFRSMIENMDEIIKVNDAGSKRS 178 Query: 177 HEQAQQRYQT-LLVIMGVAMLAGLVVALLMGGLLVRAISRPLQRAVKVAQGVAAGDLTQR 235 + A+Q Y++ L I+G+ + A +V+AL + ++ RA+SRPL AV VA+ VA GDLT Sbjct: 179 DDMAEQVYRSATLWIIGL-LAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTMD 237 Query: 236 IEVHSQDETGQLMQALQQMNDNLQGIVGQVRLSTDTIATASSEIAHGNLDLSSRTEQQAG 295 I S DETG LM +L+ MND+LQ IVG+VR TDTI TAS EIA GNLDLSSRTE+QAG Sbjct: 238 IRATSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAG 297 Query: 296 ALEETASAMEQLTSTVRANAENAQQAKQLAHSASEVAVRGGQVVRQVVDTMSSINQSSNK 355 +LEETASAME+LT+TV+ NA+NA+QA QLA SAS++A +GG VV QVV TM I +SSN+ Sbjct: 298 SLEETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNR 357 Query: 356 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVL 415 I DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK L Sbjct: 358 IADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQL 417 Query: 416 IDDSVTRVGSGSALVAQAGATIDEVVHSVQQVSAVVTEISAAGQEQSQGIEEVNRAITQM 475 IDDSV +VG+GS LV +AGAT+ EVV SV++V+ VV EISAA EQS GIEE+NRAITQM Sbjct: 418 IDDSVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQM 477 Query: 476 DESTQQNAALVEQAAAAAQAMQEQAARLSAAVSVFRL 512 DE TQQNAALVE+AAAAAQ++Q+QAARLS VSVF+L Sbjct: 478 DEVTQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKL 514 >gi|300313049|ref|YP_003777141.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 391 bits (1005), Expect = e-110, Method: Compositional matrix adjust. Identities = 272/519 (52%), Positives = 357/519 (68%), Gaps = 13/519 (2%) Query: 1 MFSKLSIRSRLIFVIAFLALLLVASGVLGVISL----RSTNAQMGSLYEDRLVALSQLER 56 F L I +L +AFLA+L++ + +LG+ S+ + NA + D + A +L Sbjct: 3 WFKNLKIARKL--QLAFLAVLVLMA-ILGIFSISQLAKVKNAS-SEISTDWMPAQKKLGD 58 Query: 57 MSAALDAARNGISTSIVGDSGDIDANMDKIEKA---LKANDAVVMKYQQTPLSSEERALL 113 + R G + + GD++A + ++ L D + Y+ + + ER L Sbjct: 59 LKLYFVRLR-GTESQLAIYDGDVEAMNGLVSRSQAILTGLDKTMKDYEASLDNVPERELY 117 Query: 114 EKMIAQRQKFVVEGIKPATEALRNRDFQGAIELYGGVMLKLYAEAHATLAQLMDLQRSVG 173 K+ Q +F+ E K A RD +L+ G KLY + L +L+ + + G Sbjct: 118 TKVAGQIGEFLAEH-KKIVAAFLARDNPQGRDLFLGYSNKLYPQILGDLEKLIKINQDGG 176 Query: 174 REMHEQAQQRYQTLLVIMGVAMLAGLVVALLMGGLLVRAISRPLQRAVKVAQGVAAGDLT 233 A + V + V + A L + + + + R I+RPLQ AV +A+ VA GDL Sbjct: 177 NAATADADDTFSKSRVGVLVLLAAALAIGMGLALYVARIIARPLQDAVDIARRVAEGDLG 236 Query: 234 QRIEVHSQDETGQLMQALQQMNDNLQGIVGQVRLSTDTIATASSEIAHGNLDLSSRTEQQ 293 +I+V S+DETGQLMQAL MN+ L+ +VGQVR TD+IATAS+EIA GNLDLS RTEQQ Sbjct: 237 AQIQVQSKDETGQLMQALDTMNEGLRKVVGQVRSGTDSIATASTEIATGNLDLSRRTEQQ 296 Query: 294 AGALEETASAMEQLTSTVRANAENAQQAKQLAHSASEVAVRGGQVVRQVVDTMSSINQSS 353 A ALEETASA+E+LTSTV+ N +NA+QA QLA +AS VA RGG VV QVV+TM +IN++S Sbjct: 297 ATALEETASALEELTSTVKQNTDNARQANQLAMAASGVAARGGGVVGQVVETMEAINEAS 356 Query: 354 NKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIK 413 N+IV+IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK Sbjct: 357 NRIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIK 416 Query: 414 VLIDDSVTRVGSGSALVAQAGATIDEVVHSVQQVSAVVTEISAAGQEQSQGIEEVNRAIT 473 LIDDSV++VG+G++LV QAG+T+ EVV SV++V+ VV+EISAA EQS GI+E+NRA+T Sbjct: 417 QLIDDSVSKVGAGTSLVRQAGSTMSEVVESVKRVTDVVSEISAASTEQSVGIDEINRAVT 476 Query: 474 QMDESTQQNAALVEQAAAAAQAMQEQAARLSAAVSVFRL 512 QMDE TQQNAALVE+AAAAAQ+MQEQA+RL+A VSVF+L Sbjct: 477 QMDEVTQQNAALVEEAAAAAQSMQEQASRLAATVSVFKL 515 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.126 0.320 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,070,549 Number of extensions: 32625 Number of successful extensions: 508 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 306 Number of HSP's successfully gapped: 71 Length of query: 541 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 451 Effective length of database: 1,193,720 Effective search space: 538367720 Effective search space used: 538367720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)