BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3847.p (570 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313253|ref|YP_003777345.1| methyl-accepting chemotaxis I M... 753 0.0 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 384 e-108 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 379 e-106 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 371 e-104 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 368 e-103 >gi|300313253|ref|YP_003777345.1| methyl-accepting chemotaxis I MCP-I serine chemoreceptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 556 Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/558 (71%), Positives = 466/558 (83%), Gaps = 2/558 (0%) Query: 13 LAKLSIRVRLMLAMGFLAVLLVSSGTVGLVAIRASNHQMRSLYEDRLVAYAYLEEIESLL 72 + K SI++RL+LA+ FL ++L++SG VGLV++ ++N +MRSLYEDRLVAYAYLE+IES L Sbjct: 1 MNKFSIKIRLILAISFLTIMLLASGIVGLVSLHSTNEKMRSLYEDRLVAYAYLEQIESTL 60 Query: 73 EGSNNGIYGIITLDSSEGWNPDEIDQRLDKIEKRLGTVAPVIKSYQATYLTAEEALLLDK 132 E + +GIYGIITLDSSEGW+P+EID+RLD + L TV PVI+SYQATYLT EE+ LL++ Sbjct: 61 ESARSGIYGIITLDSSEGWDPNEIDRRLDLLVNNLKTVEPVIRSYQATYLTPEESTLLER 120 Query: 133 FLGLRQRFVQEGVQPAIAALRKRSFQTADDIHGGAMRKIWEETRATLDQLKELQIRVGRE 192 L RQ + EGV PA+ +LRKRSFQ ADDI+ GAMRK W+ TL LKELQI VGRE Sbjct: 121 LLKQRQHYADEGVMPAVESLRKRSFQGADDIYSGAMRKQWDAVHQTLSDLKELQINVGRE 180 Query: 193 LYEKEQDDYARLMFIVSSAMVAGIVLAVLEAMLLIRAISRPLGQAVEVAQAVAAGDLSRE 252 LYE EQ Y +L+ + AM AG+++AVLEA LL+RAIS+PL QAV +AQAVA GDLSR+ Sbjct: 181 LYEHEQQRYRQLILMALLAMGAGLIVAVLEAWLLVRAISQPLTQAVGIAQAVAGGDLSRQ 240 Query: 253 VMVRSQDETGQVMQALKEMTARLHHIVSTVRASTDTITKAAHDIASGNQDLAARTEQQAA 312 + VRSQDETGQ+MQALK+MT RL+ IV+ VR T+TIT A+ +I SGN DL+ARTEQQA Sbjct: 241 IEVRSQDETGQLMQALKDMTQRLYQIVAVVRQGTETITMASKEITSGNLDLSARTEQQAG 300 Query: 313 SLEETASAMAQLTSTVKQNADNASQANQLAASASEVATRGGDVVREVVDTMTSINQSSNR 372 SLEETASAMAQLTSTVKQNADNASQANQLAASASEVA RGG+VVR+VVDTMTSINQSS R Sbjct: 301 SLEETASAMAQLTSTVKQNADNASQANQLAASASEVAVRGGEVVRQVVDTMTSINQSSTR 360 Query: 373 IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRAAAAAREIKDL 432 IVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRAA+AAREIKDL Sbjct: 361 IVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRAASAAREIKDL 420 Query: 433 IDDSVDKVGKGSALVNQAGQTMEEVVHSVRKVTDMVAEISAASQEQSNGIQEVDRAIVLM 492 IDDSV+KVGKGSALV+QAG+TMEEVV +VRKVTDMV EIS+ASQEQS GIQE+DRAIVLM Sbjct: 421 IDDSVEKVGKGSALVDQAGKTMEEVVTAVRKVTDMVGEISSASQEQSQGIQEIDRAIVLM 480 Query: 493 DSSTQQNAALVQQATAAATALQQQAQKLEQALCVFRLDDINRTGTVTSVPPVQSHQVSRA 552 DSSTQQNAALV+QA AAA AL+ QA+KL A+ FRL + + PPV + Q S Sbjct: 481 DSSTQQNAALVEQAAAAAQALEDQAEKLSLAMSAFRLGGAH-SAERLGAPPV-AAQSSSG 538 Query: 553 TSSDAAERVPGKGGLLLP 570 SS+AAERVP GGLL P Sbjct: 539 KSSEAAERVPASGGLLAP 556 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 384 bits (987), Expect = e-108, Method: Compositional matrix adjust. Identities = 242/443 (54%), Positives = 314/443 (70%), Gaps = 13/443 (2%) Query: 93 PDEIDQRLDKIEKRLGTVAPVIKSYQATYLTAEEALLLDKFLGLRQRFVQEGVQPA-IAA 151 P E + L I+ RL +A +Y+A AEE +L +KF +++ + A I+A Sbjct: 79 PAEREDALKAIKSRLDILAKQRAAYEAQISEAEEKVLYEKFSKSFATYLEIDKELARISA 138 Query: 152 LRKRSFQTADDIHGGAMRKIWEETRATLDQLKELQIRVGRELYEKEQDDYARLMFIVSSA 211 K + A + G K + R+ ++ + E+ I+V + K DD A ++ ++ Sbjct: 139 EGKE--EEARALFKGDSNKTF---RSMIENMDEI-IKVN-DAGSKRSDDMAEQVYRSATL 191 Query: 212 MVAG-----IVLAVLEAMLLIRAISRPLGQAVEVAQAVAAGDLSREVMVRSQDETGQVMQ 266 + G +V+A+ A+++ RA+SRPL +AV VA+ VA GDL+ ++ S DETG +M Sbjct: 192 WIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTMDIRATSTDETGMLMH 251 Query: 267 ALKEMTARLHHIVSTVRASTDTITKAAHDIASGNQDLAARTEQQAASLEETASAMAQLTS 326 +L+ M L IV VR TDTIT A+ +IA+GN DL++RTE+QA SLEETASAM +LT+ Sbjct: 252 SLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGSLEETASAMEELTA 311 Query: 327 TVKQNADNASQANQLAASASEVATRGGDVVREVVDTMTSINQSSNRIVDIIGVIDGIAFQ 386 TVKQNADNA QANQLAASAS++AT+GG VV +VV TM I +SSNRI DII VIDGIAFQ Sbjct: 312 TVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRIADIISVIDGIAFQ 371 Query: 387 TNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRAAAAAREIKDLIDDSVDKVGKGSAL 446 TNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQR+A+AA+EIK LIDDSV+KVG GS L Sbjct: 372 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVEKVGAGSQL 431 Query: 447 VNQAGQTMEEVVHSVRKVTDMVAEISAASQEQSNGIQEVDRAIVLMDSSTQQNAALVQQA 506 V +AG TM EVV SVR+VTD+VAEISAAS EQS GI+E++RAI MD TQQNAALV++A Sbjct: 432 VERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDEVTQQNAALVEEA 491 Query: 507 TAAATALQQQAQKLEQALCVFRL 529 AAA +LQ QA +L Q + VF+L Sbjct: 492 AAAAQSLQDQAARLSQVVSVFKL 514 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 379 bits (973), Expect = e-106, Method: Compositional matrix adjust. Identities = 258/533 (48%), Positives = 338/533 (63%), Gaps = 35/533 (6%) Query: 13 LAKLSIRVRLMLAMGFLAVLLVSSGTVGLVAIRASNHQMRSLYEDRL--VAYAYLEEIES 70 L + VRL F+ LL + I N + + DR V +A+ Sbjct: 5 FKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAF-----D 59 Query: 71 LLEGSNNGIYGI--ITLDSSEGWNPDEIDQRLDKIE---KRLGTVAPVIKSYQATYLTAE 125 L +G N I + I +D N ++R ++E K+ I + Q T + + Sbjct: 60 LRDGVNEQIKYLRGIAIDIE---NRPANEKRFAQLEVAVKQTKEALDKITARQVTAVGQK 116 Query: 126 EALLLDKFLGLRQRFVQEGVQPAIAALRKRSFQTADDIHGGAMRKIWEE-------TRAT 178 +A LD+ R + + AL K T+ D + +RKI + RA Sbjct: 117 KAKALDE-----ARIAFDASKADFLALVKAGNSTSADEY--VLRKITDTQNNYLALARAF 169 Query: 179 LD-QLKELQIRVGRELYEKEQDDYARLMFIVSSAMVAGIVLAVLEAMLLIRAISRPLGQA 237 D Q +LQ + + D A + + + +A ++ A++ L+ R+I +PL +A Sbjct: 170 ADSQDAQLQAEGAKAVA-----DGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEA 224 Query: 238 VEVAQAVAAGDLSREVMVRSQDETGQVMQALKEMTARLHHIVSTVRASTDTITKAAHDIA 297 V VA+ VAAGDL+ + S+DETGQ+MQAL++M L IVS VR T++IT A+ +IA Sbjct: 225 VRVAENVAAGDLTTRIEPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIA 284 Query: 298 SGNQDLAARTEQQAASLEETASAMAQLTSTVKQNADNASQANQLAASASEVATRGGDVVR 357 SGN DL+ARTEQQA SLEETASAM ++TSTV+QNADNA QANQ+A SASE+A +GG +V Sbjct: 285 SGNLDLSARTEQQAGSLEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVG 344 Query: 358 EVVDTMTSINQSSNRIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRS 417 VV TM INQSS +IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRS Sbjct: 345 RVVHTMDEINQSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRS 404 Query: 418 LAQRAAAAAREIKDLIDDSVDKVGKGSALVNQAGQTMEEVVHSVRKVTDMVAEISAASQE 477 LAQR+AAAA+EIK LI DSV KV GSALV QAG TME+VV SVR VTD+VAEISAAS E Sbjct: 405 LAQRSAAAAKEIKALIADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAE 464 Query: 478 QSNGIQEVDRAIVLMDSSTQQNAALVQQATAAATALQQQAQKLEQALCVFRLD 530 QS+GI+E++RA+ MD TQQNAALV+QA AAA ++Q+QA +L Q++ +F+L+ Sbjct: 465 QSSGIEEINRAVTQMDEGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLE 517 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 371 bits (952), Expect = e-104, Method: Compositional matrix adjust. Identities = 244/445 (54%), Positives = 309/445 (69%), Gaps = 13/445 (2%) Query: 114 IKSYQATYLT----AEEALLLDKFLGLRQRFVQEGVQPAIAALRKRSFQTADDIHGGAMR 169 +K+ QA Y+T EE + + L FV E IA R+ + A ++ G Sbjct: 96 LKTAQAEYVTQISEPEEKAIYPEVEKLIATFVSEH-DKIIALSRQGKDEEARNLQRGEST 154 Query: 170 KIWEETRATLDQLKELQIRVGRELYEKEQDDY---ARLMFIVSSAMVAGIVLAVLEAMLL 226 K + + +D+L + + G ++ K+ D ARL IV+ A G LA+L A+ + Sbjct: 155 KAYRTSLQQIDKLAAVNDK-GADISNKQADAIYAQARLWIIVTVAACIG--LAMLLAVWV 211 Query: 227 IRAISRPLGQAVEVAQAVAAGDLSREVMVRSQDETGQVMQALKEMTARLHHIVSTVRAST 286 R I+RPL +AV VAQ VA GDL+ + +DETGQ++ ALK M L IV VR T Sbjct: 212 SRLIARPLEEAVSVAQRVAGGDLTTRIEPAGKDETGQLLVALKSMNDSLVGIVGQVRMGT 271 Query: 287 DTITKAAHDIASGNQDLAARTEQQAASLEETASAMAQLTSTVKQNADNASQANQLAASAS 346 TIT A+ +IASGN DL++RTE+QA+SLEETASAM +LTSTVKQNADNA QANQLA SAS Sbjct: 272 QTITTASTEIASGNLDLSSRTEEQASSLEETASAMEELTSTVKQNADNARQANQLAVSAS 331 Query: 347 EVATRGGDVVREVVDTMTSINQSSNRIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGR 406 EVA++GG VV +VVDTM SIN SS +I DIIGVIDGIAFQTNILALNAAVEAARAGEQGR Sbjct: 332 EVASQGGAVVNQVVDTMGSINASSRKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGR 391 Query: 407 GFAVVAAEVRSLAQRAAAAAREIKDLIDDSVDKVGKGSALVNQAGQTMEEVVHSVRKVTD 466 GFAVVA+EVRSLAQR+A AA+EIK+LI+ SV +V GS LV +AG TM EVV SVR+VTD Sbjct: 392 GFAVVASEVRSLAQRSAGAAKEIKELIEGSVAQVDMGSKLVERAGITMSEVVQSVRRVTD 451 Query: 467 MVAEISAASQEQSNGIQEVDRAIVLMDSSTQQNAALVQQATAAATALQQQAQKLEQALCV 526 +V EIS+ASQEQS GI++V+ AI MD TQQNAALV++A AAA +LQ+QA+ L Q + Sbjct: 452 IVGEISSASQEQSEGIEQVNLAIAQMDEVTQQNAALVEEAAAAAQSLQEQAETLTQTVGF 511 Query: 527 FRLDDINRTGTVTSVPPVQSHQVSR 551 F+L+ + S PPV++ V+R Sbjct: 512 FKLE--QQPDEPASRPPVRAASVAR 534 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 368 bits (945), Expect = e-103, Method: Compositional matrix adjust. Identities = 249/534 (46%), Positives = 336/534 (62%), Gaps = 35/534 (6%) Query: 13 LAKLSIRVRLMLAMGFLA---VLLVSSGTVGLVAIRASNHQMRSLYEDRLVAYAYLEEIE 69 LA L I RL + G +A V+LVS + A+N YE R A E + Sbjct: 3 LADLKIGTRLYMGFGLVAAILVILVSVAYTNFARLGAANELNVHTYEVRAQLRAMAESLI 62 Query: 70 SLLEGSNNGIYGIITLDSSEGWNPDEIDQRLDKIEKRLGTVAPVIKSYQATYLTAEEALL 129 ++ G G++ ID L+ + T ++ + LT++ L Sbjct: 63 NIETGQR-------------GFSLSGIDASLEPYHLGMTTFKTALEKTRT--LTSDNTLQ 107 Query: 130 LDKFLGL---RQRFVQEGVQPAIA---ALRKRSFQTADDI---HGGAMRKIWEETRATLD 180 + L QR+++ + PAI A+R+ Q A + G + + R LD Sbjct: 108 QQRLQELSDSEQRWLKSAIDPAIELRRAVREGREQMAAVVAFEQAGKGKSQMDSMRVLLD 167 Query: 181 QLKELQIRVGRELYEKEQDDYARLMFIVSSAMVAG----IVLAVLEAMLLIRAISRPLGQ 236 L R L + ++ A L + S+ ++ G ++LAVL A L I+RPL Sbjct: 168 DLD----RTESALLGERAEEAAALRSVTSTTLIGGGAIALMLAVLLAWWLANNITRPLAL 223 Query: 237 AVEVAQAVAAGDLSREVMVRSQDETGQVMQALKEMTARLHHIVSTVRASTDTITKAAHDI 296 AV++A+ VA+GDL+ + VRS+DETG ++ ALK+M L IVS VR T+ I A+ +I Sbjct: 224 AVQLARRVASGDLTARIEVRSRDETGALLGALKDMNESLVRIVSGVRRGTEMIATASSEI 283 Query: 297 ASGNQDLAARTEQQAASLEETASAMAQLTSTVKQNADNASQANQLAASASEVATRGGDVV 356 A+GN DL++RTEQQA+SLEETAS+M +LTSTV+QN NA +AN++A +AS++A+ GG VV Sbjct: 284 ATGNLDLSSRTEQQASSLEETASSMEELTSTVQQNTANAREANRMAQAASDIASSGGGVV 343 Query: 357 REVVDTMTSINQSSNRIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVR 416 VVDTM IN SS +IVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR Sbjct: 344 ARVVDTMEEINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR 403 Query: 417 SLAQRAAAAAREIKDLIDDSVDKVGKGSALVNQAGQTMEEVVHSVRKVTDMVAEISAASQ 476 SLAQR+AAAA+EIK LI DSV KV GS LVN+AG TM E+V SV++VT+M+ EISAA + Sbjct: 404 SLAQRSAAAAKEIKALISDSVAKVESGSLLVNEAGDTMREIVESVQRVTNMINEISAAGE 463 Query: 477 EQSNGIQEVDRAIVLMDSSTQQNAALVQQATAAATALQQQAQKLEQALCVFRLD 530 EQ +GI++V +A+ MD TQQNAALV+QA AA+ +LQ+QAQ+L QA+ VFRL+ Sbjct: 464 EQRSGIEQVSQAVGQMDQVTQQNAALVEQAAAASQSLQEQAQELAQAVSVFRLE 517 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.127 0.331 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,123,047 Number of extensions: 33982 Number of successful extensions: 427 Number of sequences better than 1.0e-08: 67 Number of HSP's gapped: 272 Number of HSP's successfully gapped: 67 Length of query: 570 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 480 Effective length of database: 1,193,720 Effective search space: 572985600 Effective search space used: 572985600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)