BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3845.p
         (952 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313251|ref|YP_003777343.1| excinuclease ATPase subunit [He...  1945   0.0  

>gi|300313251|ref|YP_003777343.1| excinuclease ATPase subunit
           [Herbaspirillum seropedicae SmR1]
          Length = 952

 Score = 1945 bits (5038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 941/952 (98%), Positives = 949/952 (99%)

Query: 1   MEEIRIRGARTHNLKNINLDLPRNKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           MEEIRIRGARTHNLKNINLDLPRNKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
Sbjct: 1   MEEIRIRGARTHNLKNINLDLPRNKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLQLMEKPDVDMIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARVGTPYC 120
           ARQFLQLMEKPDVDMIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARVGTPYC
Sbjct: 61  ARQFLQLMEKPDVDMIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARVGTPYC 120

Query: 121 PDHPEHPLEAQSVSQMVDAVLALPEDTKLMIMAPVVANRKGEHADLFEEMQAQGFVRFRI 180
           PDHPEHPLEAQSVSQMVDAVLALPEDTKLMIMAPVVANRKGEHADLFEEMQAQGFVRFRI
Sbjct: 121 PDHPEHPLEAQSVSQMVDAVLALPEDTKLMIMAPVVANRKGEHADLFEEMQAQGFVRFRI 180

Query: 181 QSGTGTAKVYEVDELPKLKKTEKHTIDVVIDRVKVKAEIKQRLAESFETALRLADGRAIA 240
           QSGTGTAKVYEVD+LPKLKKTEKHTIDVVIDRVKVKA+IKQRLAESFETALRLADGRAIA
Sbjct: 181 QSGTGTAKVYEVDDLPKLKKTEKHTIDVVIDRVKVKADIKQRLAESFETALRLADGRAIA 240

Query: 241 LEMDSGKEHLYSNKFACPICGYSLQELEPRLFSFNNPMGACPECDGLGHIEFFDPKRIVA 300
           LEMDSGKEHLYSNKFACPICGYSLQELEPRLFSFNNPMGACPECDGLGHIEFFDPKRIVA
Sbjct: 241 LEMDSGKEHLYSNKFACPICGYSLQELEPRLFSFNNPMGACPECDGLGHIEFFDPKRIVA 300

Query: 301 FPNLSLASGAIKGWDRRNQFYFQMLTSIAAFYDFDLDVPFEQLDDKAQQVVLYGSGRQAI 360
           FPNLSLASGAIKGWDRRNQFYFQMLTSIAA+Y FDLDVPFEQLDDKAQQ VLYGSGRQ I
Sbjct: 301 FPNLSLASGAIKGWDRRNQFYFQMLTSIAAYYGFDLDVPFEQLDDKAQQAVLYGSGRQTI 360

Query: 361 PFAYVNERGRTVVKEHTFEGVVNNLQRRYRETDSMAVKEELAKFINEKQCPSCHGARLRV 420
           PFAYVNERGRTVVKEHTFEGVVNNLQRRYRETDSMAVKEELAKFINEKQCPSCHGARLRV
Sbjct: 361 PFAYVNERGRTVVKEHTFEGVVNNLQRRYRETDSMAVKEELAKFINEKQCPSCHGARLRV 420

Query: 421 EARYVKVGTGKQQRAIYEVAATPLRETLSFFETLKLTGAKKEIADRIIKEIVSRLTFLNN 480
           EARYVKVG+GKQQRAIYEVAATPLRETLSFFETLKLTGAKKEIADRIIKEIVSRLTFLNN
Sbjct: 421 EARYVKVGSGKQQRAIYEVAATPLRETLSFFETLKLTGAKKEIADRIIKEIVSRLTFLNN 480

Query: 481 VGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIETLK 540
           VGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLI+TLK
Sbjct: 481 VGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIDTLK 540

Query: 541 HLRDIGNTVLVVEHDEDAIRTADYVVDMGIGAGVHGGDVIAHGPLPDILKNKKSLTAKYL 600
           HLRDIGNTVLVVEHDEDAIRTADYVVDMGIGAGVHGGDVIAHGPLPDILKNKKSLTAKYL
Sbjct: 541 HLRDIGNTVLVVEHDEDAIRTADYVVDMGIGAGVHGGDVIAHGPLPDILKNKKSLTAKYL 600

Query: 601 NGSLEIAVPKKRTPCDESRMLTITGATGNNLKNVDLELPVGLLTCVTGVSGSGKSTLVND 660
           NGSLEIAVPKKRTPCDESRMLTI+GATGNNLKNVDLELPVGLLTCVTGVSGSGKSTLVND
Sbjct: 601 NGSLEIAVPKKRTPCDESRMLTISGATGNNLKNVDLELPVGLLTCVTGVSGSGKSTLVND 660

Query: 661 TLYLSAARHLYGSQTEPAAHEAIGGLEHFDKVIAVDQAPIGRTPRSNPATYTGLFTPIRD 720
           TLYLSAARHLYGSQTEPAAHEAIGGLEHFDKVIAVDQAPIGRTPRSNPATYTGLFTPIRD
Sbjct: 661 TLYLSAARHLYGSQTEPAAHEAIGGLEHFDKVIAVDQAPIGRTPRSNPATYTGLFTPIRD 720

Query: 721 LFATVPMAKERGYSAGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCDVCHGKRYNR 780
           LFATVPMAKERGYSAGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCDVCHGKRYNR
Sbjct: 721 LFATVPMAKERGYSAGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCDVCHGKRYNR 780

Query: 781 ETLEVQYKGKNITEILDMTVEDAHEFFKPVPLIARKLQTLLDVGLGYIKLGQSATTLSGG 840
           ETLEVQYKGKNITEILDMTVEDAHEFFKPVPLIARKLQTLLDVGLGYIKLGQSATTLSGG
Sbjct: 781 ETLEVQYKGKNITEILDMTVEDAHEFFKPVPLIARKLQTLLDVGLGYIKLGQSATTLSGG 840

Query: 841 EAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIDLLLKVIHRLRDQGNTVTIIEHNLD 900
           EAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIDLLLKVIHRLRDQGNTVTIIEHNLD
Sbjct: 841 EAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIDLLLKVIHRLRDQGNTVTIIEHNLD 900

Query: 901 VIKTADWIIDLGPEGGAGGGRIVAAGTPEEVARNPASVTGKYLAPLLKKKTK 952
           VIKTADWIIDLGPEGGAGGGRIVAAGTPEEVA+NPASVTGKYLAPLLKKK+K
Sbjct: 901 VIKTADWIIDLGPEGGAGGGRIVAAGTPEEVAKNPASVTGKYLAPLLKKKSK 952


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,877,528
Number of extensions: 124416
Number of successful extensions: 877
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 910
Number of HSP's successfully gapped: 1
Length of query: 952
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 858
Effective length of database: 1,174,780
Effective search space: 1007961240
Effective search space used: 1007961240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 135 (56.6 bits)