BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3844.p
         (586 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313250|ref|YP_003777342.1| 4-amino-4-deoxy-L-arabinose tra...   872   0.0  
gi|300310191|ref|YP_003774283.1| undecaprenyl-phosphate-4-amino-...    63   8e-11

>gi|300313250|ref|YP_003777342.1| 4-amino-4-deoxy-L-arabinose
           transferase transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 584

 Score =  872 bits (2253), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/585 (77%), Positives = 502/585 (85%), Gaps = 2/585 (0%)

Query: 1   MFLFDSLTEDKAGTTLTAAPAPASAATRRALPERAAWLLLVLAGAAWLLPGIVGHGPWKQ 60
           MFL  S   +K G +++A PA  S    RA   R  WLLLVLAG AWLLPGI GHGPWKQ
Sbjct: 1   MFLIKSPAINKVGPSVSATPA--STYGERATFARFGWLLLVLAGLAWLLPGIFGHGPWKQ 58

Query: 61  DETYSFGMIHHMLVSGQYLVPTNAGQPFMEKPPLYYWTAVLFAKLLHPLLPYHDGARLAS 120
           DETY+FG+IHHMLVSG+YLVPTNAGQPFMEKPPLYYWTA+L AKLL+PLLPYH+GARLAS
Sbjct: 59  DETYTFGVIHHMLVSGEYLVPTNAGQPFMEKPPLYYWTAMLLAKLLYPLLPYHEGARLAS 118

Query: 121 VFYNLVSLVFVARIAKLMWHQRTLMSLPVLATLALFAGSPGMVKHAHDMFTDVALVTGGT 180
           V YNLV+LVFVARIA+LMW++R ++SLPVL T+ALFAGSPGM+KHAHDMFTDVALVTGG 
Sbjct: 119 VLYNLVTLVFVARIAQLMWNERRVLSLPVLGTVALFAGSPGMIKHAHDMFTDVALVTGGA 178

Query: 181 MATYGLLALALNEERRTPAWAAAVWFGLGVGITMMAKGLFVPLTFAATAMAVSAMVPACR 240
           MA YGLLA+ALNEERR P+W+AA WFGLGVGIT M KGLFVPLTFAATAMAV  +V  CR
Sbjct: 179 MAIYGLLAIALNEERRAPSWSAAFWFGLGVGITQMTKGLFVPLTFAATAMAVGVLVRPCR 238

Query: 241 ARSYWKMIGAAVLVSLPFFVIWPTLLAQHSMPLFMEWFWDNNVGRFFGFSVNKLGSDNDH 300
           + SYWKM+GAAVLVSLPFFV+WP LLAQHS+PLFMEWFWDNNVGRFFGFSV KLGSDNDH
Sbjct: 239 SLSYWKMVGAAVLVSLPFFVVWPALLAQHSVPLFMEWFWDNNVGRFFGFSVYKLGSDNDH 298

Query: 301 TVVLRALAGFALPGSLLALLALATGDWRQVRSARVALPLAFAAISLAVLQSSATARQLYL 360
           TV+LRAL GFALPGS+LA+LALATGDWRQ  S RVALPLAFAAISLAVLQSSATARQLYL
Sbjct: 299 TVILRALIGFALPGSVLAVLALATGDWRQTGSPRVALPLAFAAISLAVLQSSATARQLYL 358

Query: 361 LPVLLPLAMLGARALPRLPDGFHLAWDWLSRLGFGLLAIGIWATYFISTLPAEQHQAIAF 420
           LPVLLPLA+LGARA+ RLP+ FHL WDW SR+ FG+LA  IWA Y +S+LPA  H  I F
Sbjct: 359 LPVLLPLALLGARAIARLPNAFHLGWDWFSRIAFGVLAAAIWAIYVVSSLPAADHHWIDF 418

Query: 421 MGKWLPLDFVTPIQPLALLAAGSMSILWIGSLGLLRLAGKWRGAFSWFGGITLMWGLAFT 480
           MG+WLPL+FVTP+QPLAL AA  MS+LW+  LG LRLAG+WRGA SWF GITLMWGLAFT
Sbjct: 419 MGQWLPLNFVTPLQPLALAAAVGMSVLWLWGLGQLRLAGQWRGALSWFAGITLMWGLAFT 478

Query: 481 LLLPWADYGKSYEYVYADLKAKIGPVWREGDCMASQGLGESEAPMLYYYIGILHQPIDGH 540
           LLLPWADYGKSYE+VY DLK +I   W++GDCMAS+ LGESEAPMLYYY GILHQPIDG 
Sbjct: 479 LLLPWADYGKSYEFVYTDLKQQIAAQWQDGDCMASENLGESEAPMLYYYTGILHQPIDGV 538

Query: 541 RKTQCRWVIQEMPGAHKRPHGHWILFWEGRRDGDDGQLFKIYQRA 585
            +TQCRWV+ E PG    P G W LFWEGRRDGDDGQL K+Y+RA
Sbjct: 539 YQTQCRWVLLETPGNTPLPQGQWKLFWEGRRDGDDGQLLKVYRRA 583


>gi|300310191|ref|YP_003774283.1|
           undecaprenyl-phosphate-4-amino-L-arabinose--lipid A
           4-amino-L-arabinosyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 574

 Score = 62.8 bits (151), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 14/132 (10%)

Query: 461 WRGAFSWFGGITLMWGLAFTLLLPWADYGKSYEYVYADLKAKIGPVWREGDCMASQGLGE 520
           WR      GG+ L W L  TL LPW +YGKSY  V   +++K+G V     C+ +  +G 
Sbjct: 448 WRAVVLSSGGVILCWVLLMTLWLPWVNYGKSYAGVAEQIESKLGSV---KQCVQTN-VGP 503

Query: 521 SEAPMLYYYIGILHQPIDGHRKTQCRWVI-------QEMPGAHKRPHGHWILFWEGRRDG 573
           ++     Y+  +      G R   C +++       Q+     ++  G W + WEGRR  
Sbjct: 504 AQRASFAYFGNVRFADEHGQR---CDYLLLQDDISNQDAALMLRQYPGAWRMVWEGRRPS 560

Query: 574 DDGQLFKIYQRA 585
           D  + F++Y+R+
Sbjct: 561 DRDERFRLYRRS 572


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,823,989
Number of extensions: 78460
Number of successful extensions: 328
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 2
Length of query: 586
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 496
Effective length of database: 1,193,720
Effective search space: 592085120
Effective search space used: 592085120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 133 (55.8 bits)