BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3843.p
         (413 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313249|ref|YP_003777341.1| major facilitator superfamily p...   682   0.0  

>gi|300313249|ref|YP_003777341.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 398

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/398 (90%), Positives = 378/398 (94%)

Query: 16  MSRAEVRASASLASIFSLRMLGLFLVLPVFAVHAHSLPGGDSDTLVGVALGIYGLAQACG 75
           MSRAEVRASASLASIFSLRMLGLFLVLPVFAVHAHSLPGGD+DTLVG+ALGIYGLAQA G
Sbjct: 1   MSRAEVRASASLASIFSLRMLGLFLVLPVFAVHAHSLPGGDNDTLVGIALGIYGLAQAFG 60

Query: 76  QIPYGIASDRYGRKRIIVIGLLLFALGSFVAAGAHNVLWLLIGRALQGSGAISAAITAFI 135
           QIPYGIASDRYGRKRIIVIGLLLFALGSFVAA A +V+WLL+GRALQGSGAISAAITAFI
Sbjct: 61  QIPYGIASDRYGRKRIIVIGLLLFALGSFVAAAATSVIWLLVGRALQGSGAISAAITAFI 120

Query: 136 ADSTREEHRTKAMAMVGASIGVTFAVSMVASPLLYKSIGMGGIFGLTGVLSLIAIAVVLW 195
           ADSTREEHRTKAMAMVGASIGVTFAVSMVASPLLYKSIGMGGIFGLTGVLSLIAIAVV+W
Sbjct: 121 ADSTREEHRTKAMAMVGASIGVTFAVSMVASPLLYKSIGMGGIFGLTGVLSLIAIAVVVW 180

Query: 196 VVPTAPMVQAKRVPLREVLRHAELLRLNFGVFTLHLTQVAMFMVVPAALVQMAGLPLGEH 255
           VVP AP+VQA+RVPLREVLRH EL+RLNFGVFTLHLTQVAMFMVVP ALVQ+AGLPLGEH
Sbjct: 181 VVPAAPLVQARRVPLREVLRHGELMRLNFGVFTLHLTQVAMFMVVPGALVQLAGLPLGEH 240

Query: 256 WKIYLPVVLASFVLMLPPIIVAEKYGRMKSVFVAAISLMLLVQLGFWAVLSHPLAHLWML 315
           WKIYLPVVLASFVLMLPP+ VAEKYGRMK VF+ AI LMLLVQLGFWAVLSHPL H WML
Sbjct: 241 WKIYLPVVLASFVLMLPPVFVAEKYGRMKQVFLGAIGLMLLVQLGFWAVLSHPLGHWWML 300

Query: 316 VGLLFLFFVAFNILEAAQPSLVSRIAPPAAKGAALGVYNTLQALGLSCGGALGGWLKQHV 375
           V LLFLFFVAFNILEA+QPSLVSRIAPPAAKGAALGVYNTLQALGLSCGGALGGW+KQ+V
Sbjct: 301 VALLFLFFVAFNILEASQPSLVSRIAPPAAKGAALGVYNTLQALGLSCGGALGGWIKQNV 360

Query: 376 NNSAVFLLCAVLTATWLIIAANMKNLPRRAAPVAGATA 413
             S VF L AV+T TWLIIAANMKNLPRR+AP AGATA
Sbjct: 361 GISEVFALSAVVTLTWLIIAANMKNLPRRSAPAAGATA 398


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.139    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,209,492
Number of extensions: 49397
Number of successful extensions: 371
Number of sequences better than 1.0e-08: 11
Number of HSP's gapped: 377
Number of HSP's successfully gapped: 11
Length of query: 413
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 325
Effective length of database: 1,203,190
Effective search space: 391036750
Effective search space used: 391036750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)