BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3836.p (568 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310634|ref|YP_003774726.1| methyl-accepting chemotaxis dom... 901 0.0 gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis tra... 375 e-105 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 371 e-104 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 357 1e-99 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 356 3e-99 >gi|300310634|ref|YP_003774726.1| methyl-accepting chemotaxis domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 568 Score = 901 bits (2329), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/567 (77%), Positives = 503/567 (88%) Query: 1 MKTSLIGRFTIRQIFIMLTAVISLLMATIVLIAMALERSDAELNAANENRYVSFQLATEL 60 MK SL+ RF+IRQIFIMLTAVI++LM IVL A+A++R DA LNAANE+RY SF LATEL Sbjct: 1 MKISLVSRFSIRQIFIMLTAVITVLMTLIVLAALAVDRYDARLNAANESRYASFLLATEL 60 Query: 61 RQSSDDLTRLARTYVITADPSYEKQYEAILAIRDGRQPRPENYGRIYWDFVAADGKPPRP 120 RQSSDDLTRLARTYV+T DPSYE+QYEAIL IR+G++ RPE+YGRIYWDFVAADGK PRP Sbjct: 61 RQSSDDLTRLARTYVVTGDPSYEQQYEAILDIRNGKKARPEHYGRIYWDFVAADGKAPRP 120 Query: 121 DSTQRIALLDLMRQAGFAEAELAKLSEAKANSDALVKTETVAMNMVKGLYEDAQGNFTRR 180 DS Q +AL DLMR AGF AE+ KL EAK NSDALVKTE +AMNMVKGLY DAQGNFT+R Sbjct: 121 DSNQHVALTDLMRAAGFTAAEMGKLEEAKNNSDALVKTEVIAMNMVKGLYADAQGNFTKR 180 Query: 181 GEPDMAKARELMHDHAYHVNKAKIMRPVDQFFAMLDARTSAQVEKARAHSANMALLFHAL 240 +PD+A+ARELMH+HAYHV KAKIMRPVD+FFA+LDART+ QVE ARA + +MA LF++L Sbjct: 181 ADPDLAQARELMHNHAYHVYKAKIMRPVDEFFALLDARTTEQVESARAQATHMATLFYSL 240 Query: 241 IGMALVVLACTLMVVYKAIRDPLAHAAGVARRVAQGDLTAEINTNIKGETGELLEALRTM 300 I +ALVVLACTLM+VY AIR+PLAHAA VARRVA GDLTA+I+ IKGETGELLEAL M Sbjct: 241 IAIALVVLACTLMLVYHAIRNPLAHAASVARRVAHGDLTAQIDPAIKGETGELLEALTIM 300 Query: 301 QAGLQTIVTDVREGAHRIDNSATEIAAGTLDLSNRTEQQAGSLEETASSMEEITSTVKQN 360 Q+GLQTIV DVR GA I+ SA EIA+GTLDLS+RTEQQA SLEETASSMEE+TSTVKQN Sbjct: 301 QSGLQTIVLDVRNGAQYINTSANEIASGTLDLSSRTEQQASSLEETASSMEELTSTVKQN 360 Query: 361 AGNARLASELASAASAVALKGGAVVSQVVETMGAINASSKKVVDIIGVIDGIAFQTNILA 420 AGNARLASELA+ AS VA++GG VV++VV+TMGAIN SSK++VDII VIDGIAFQTNILA Sbjct: 361 AGNARLASELANTASGVAVRGGEVVARVVDTMGAINESSKRIVDIIAVIDGIAFQTNILA 420 Query: 421 LNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKELIDNSVTKVDAGSLLVNQAG 480 LNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIK LIDNSV+KV+AGS LVN+AG Sbjct: 421 LNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKTLIDNSVSKVEAGSTLVNEAG 480 Query: 481 STMQEVVSSVQRVTEIVADISSASQEQSAGVEQVQQAISQMDNVTQQNAALVEQASAAAE 540 STM+EVV SVQRVTEI+ IS+ASQEQ++G+EQ+QQAI+QMD VTQQNAALVEQASAA+E Sbjct: 481 STMREVVESVQRVTEIITGISNASQEQASGIEQIQQAINQMDQVTQQNAALVEQASAASE 540 Query: 541 SMQGQAHKLSELVGAFKTKAGSPSLVV 567 SMQ QAHKL++LVGAFKT +VV Sbjct: 541 SMQMQAHKLTDLVGAFKTPTAMGMMVV 567 >gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 595 Score = 375 bits (963), Expect = e-105, Method: Compositional matrix adjust. Identities = 223/567 (39%), Positives = 342/567 (60%), Gaps = 22/567 (3%) Query: 1 MKTSLIGRFTIRQIFIMLTAVISLLMATIVLIAMALERSDAELNAANENRYVSFQLATEL 60 M+ ++ R +I+Q+FI L V+S+L+A +V + AL+ ++ EL A+++RY S LA EL Sbjct: 1 MRETMTHRMSIKQLFIWLALVLSILVAVVVSLTGALKDANLELERAHQSRYDSTALANEL 60 Query: 61 RQSSDDLTRLARTYVITADPSYEKQYEAILAIRDGRQPRPENYGRIYWDFVAADGKPPRP 120 R++++D+T+ AR YV T DP+ E +Y I+ IR+G++ RP NY R WD V A P Sbjct: 61 RRTAEDMTKFARAYVTTGDPNDEDRYYMIMDIRNGKRARPSNYDRFNWDLVNARKLALDP 120 Query: 121 DSTQRIALLDLMRQAGFAEAELAKLSEAKANSDALVKTETVAMNMVKGLYEDAQGNFTRR 180 + + L +LM++AGF + ELAK+ EA D L K E A + VKG ++D +G +T Sbjct: 121 GAPG-VPLGELMKRAGFTDEELAKMQEALKLGDQLAKIEITAFHAVKGEFDDGEGKYTVI 179 Query: 181 GEPDMAKARELMHDHAYHVNKAKIMRPVDQFFAMLDARTSAQVEKARAHSANMALLFHAL 240 G P+ A A+EL+ D Y K+M PV+ F ++D RT A V +A A + L Sbjct: 180 GAPNQAMAQELVFDQTYRTLFGKLMSPVNDFLRLVDERTQANVRQAGKDYAELEQKIFWL 239 Query: 241 IGMALVVLACTLMVVYKAIRDPLA----HAAGVARRVAQGDLTAEINTNIKGETGELLEA 296 + ++VVL L + Y+ IR + A V RRVA+GDLT + KG+ +L + Sbjct: 240 LAASVVVLFACLWLSYRIIRSQIGGEPRDAMSVLRRVAEGDLTVVVPLP-KGDKLSVLYS 298 Query: 297 LRTMQAGLQTIVTDVREGAHRIDNSATEIAAGTLDLSNRTEQQAGSLEETASSMEEITST 356 + M ++ DV A + +++ +I++ + LS+ QQA ++EET++S+EEIT+T Sbjct: 299 TQQMINKWTDVIGDVSGTATSLASASEQISSSSQALSHNAAQQAANVEETSASVEEITAT 358 Query: 357 VKQNAGNARLASELASAASAVALKGGAVVSQVVETMGAINASSKKVVDIIGVIDGIAFQT 416 + QNA NAR +AS +++ A +GG V + V M K++ IG+ID IA+QT Sbjct: 359 IAQNADNARTTDGIASLSASAATEGGEAVRETVAAM-------KQIASKIGIIDDIAYQT 411 Query: 417 NILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKELIDNSVTKVDAGSLLV 476 N+LALNAA+EAARAGE G+GFAVVA EVR LA+RS +AA+EI + + SV L Sbjct: 412 NLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERSQSAAQEIIAVAETSVG-------LA 464 Query: 477 NQAGSTMQEVVSSVQRVTEIVADISSASQEQSAGVEQVQQAISQMDNVTQQNAALVEQAS 536 +AG + ++V S+++ ++V +I++AS EQS G+EQ+ A+ QM TQ A+ E+ S Sbjct: 465 EKAGGLLNQMVPSIRKTADLVQEIAAASHEQSTGLEQINNAVHQMAQTTQMTASASEELS 524 Query: 537 AAAESMQGQAHKLSELVGAFKTKAGSP 563 A +E M QA L +L+ F+ G P Sbjct: 525 ATSEEMSAQAIHLQDLMRFFQV--GEP 549 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 371 bits (952), Expect = e-104, Method: Compositional matrix adjust. Identities = 207/305 (67%), Positives = 253/305 (82%) Query: 259 IRDPLAHAAGVARRVAQGDLTAEINTNIKGETGELLEALRTMQAGLQTIVTDVREGAHRI 318 I PL A V+R VA+GDL++EI + ETG+LL++L+ M L+ IV++VR G I Sbjct: 215 ITKPLHRAVDVSRCVAEGDLSSEIAVTSRDETGQLLQSLKDMNQSLRGIVSNVRSGTDTI 274 Query: 319 DNSATEIAAGTLDLSNRTEQQAGSLEETASSMEEITSTVKQNAGNARLASELASAASAVA 378 +++EIAAG LDLS+RTEQQA SL ETAS+MEE+ STV+QNA NAR AS+LA++ASAVA Sbjct: 275 STASSEIAAGNLDLSSRTEQQASSLAETASAMEELISTVRQNADNARQASQLANSASAVA 334 Query: 379 LKGGAVVSQVVETMGAINASSKKVVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFA 438 +GG VVSQVV+TMGAINASS+K+VDII VIDGIAFQTNILALNAAVEAARAGEQGRGFA Sbjct: 335 EQGGGVVSQVVDTMGAINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFA 394 Query: 439 VVATEVRSLAQRSAAAAKEIKELIDNSVTKVDAGSLLVNQAGSTMQEVVSSVQRVTEIVA 498 VVA+EVR+LAQRSA+AAKEIKELI++SV KVD GS LV QAG+TMQEVVSSV+RVT+IVA Sbjct: 395 VVASEVRTLAQRSASAAKEIKELINDSVGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVA 454 Query: 499 DISSASQEQSAGVEQVQQAISQMDNVTQQNAALVEQASAAAESMQGQAHKLSELVGAFKT 558 +IS+AS EQ+ G+EQ+ AI+QMD VTQQNAALVE+A+AAA SMQ QA +L ++V F+ Sbjct: 455 EISAASTEQTHGIEQINLAITQMDQVTQQNAALVEEAAAAAASMQTQAGRLMQMVSVFRL 514 Query: 559 KAGSP 563 P Sbjct: 515 SEREP 519 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 357 bits (916), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 216/330 (65%), Positives = 258/330 (78%), Gaps = 6/330 (1%) Query: 234 ALLFHALIGMALVVLACT----LMVVY--KAIRDPLAHAAGVARRVAQGDLTAEINTNIK 287 A+ A + + + V AC L+ V+ + I PL A VA+RVA GDLT I K Sbjct: 184 AIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIEPAGK 243 Query: 288 GETGELLEALRTMQAGLQTIVTDVREGAHRIDNSATEIAAGTLDLSNRTEQQAGSLEETA 347 ETG+LL AL++M L IV VR G I ++TEIA+G LDLS+RTE+QA SLEETA Sbjct: 244 DETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSLEETA 303 Query: 348 SSMEEITSTVKQNAGNARLASELASAASAVALKGGAVVSQVVETMGAINASSKKVVDIIG 407 S+MEE+TSTVKQNA NAR A++LA +AS VA +GGAVV+QVV+TMG+INASS+K+ DIIG Sbjct: 304 SAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIADIIG 363 Query: 408 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKELIDNSVT 467 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AAKEIKELI+ SV Sbjct: 364 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEGSVA 423 Query: 468 KVDAGSLLVNQAGSTMQEVVSSVQRVTEIVADISSASQEQSAGVEQVQQAISQMDNVTQQ 527 +VD GS LV +AG TM EVV SV+RVT+IV +ISSASQEQS G+EQV AI+QMD VTQQ Sbjct: 424 QVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDEVTQQ 483 Query: 528 NAALVEQASAAAESMQGQAHKLSELVGAFK 557 NAALVE+A+AAA+S+Q QA L++ VG FK Sbjct: 484 NAALVEEAAAAAQSLQEQAETLTQTVGFFK 513 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 356 bits (914), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 214/351 (60%), Positives = 269/351 (76%), Gaps = 2/351 (0%) Query: 216 DARTSAQVEKARAHSANMALLFHALIGMALVVLACTL-MVVYKAIRDPLAHAAGVARRVA 274 DA+ A+ KA A A MA+ MA V+ A L ++ ++I PL A VA VA Sbjct: 174 DAQLQAEGAKAVADGA-MAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVA 232 Query: 275 QGDLTAEINTNIKGETGELLEALRTMQAGLQTIVTDVREGAHRIDNSATEIAAGTLDLSN 334 GDLT I + + ETG+L++ALR M L IV+ VR G I ++ EIA+G LDLS Sbjct: 233 AGDLTTRIEPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSA 292 Query: 335 RTEQQAGSLEETASSMEEITSTVKQNAGNARLASELASAASAVALKGGAVVSQVVETMGA 394 RTEQQAGSLEETAS+MEE+TSTV+QNA NAR A+++A +AS +AL+GG +V +VV TM Sbjct: 293 RTEQQAGSLEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDE 352 Query: 395 INASSKKVVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAA 454 IN SS+K+VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAA Sbjct: 353 INQSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAA 412 Query: 455 AKEIKELIDNSVTKVDAGSLLVNQAGSTMQEVVSSVQRVTEIVADISSASQEQSAGVEQV 514 AKEIK LI +SV KV+ GS LV QAG+TM++VVSSV+ VT+IVA+IS+AS EQS+G+E++ Sbjct: 413 AKEIKALIADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEI 472 Query: 515 QQAISQMDNVTQQNAALVEQASAAAESMQGQAHKLSELVGAFKTKAGSPSL 565 +A++QMD TQQNAALVEQA+AAA+SMQ QA +L++ + FK + G+ S+ Sbjct: 473 NRAVTQMDEGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQGAASI 523 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.126 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,242,109 Number of extensions: 43068 Number of successful extensions: 562 Number of sequences better than 1.0e-08: 69 Number of HSP's gapped: 337 Number of HSP's successfully gapped: 70 Length of query: 568 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 478 Effective length of database: 1,193,720 Effective search space: 570598160 Effective search space used: 570598160 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)