BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3835.p (362 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313246|ref|YP_003777338.1| two component transmembrane sen... 575 e-165 gi|300313895|ref|YP_003777987.1| two-component system sensor his... 140 1e-34 gi|300311272|ref|YP_003775364.1| two component sensor histidine ... 135 4e-33 gi|300312679|ref|YP_003776771.1| periplasmic sensor signal trans... 100 3e-22 gi|300309362|ref|YP_003773454.1| transmembrane sensory transduct... 93 3e-20 >gi|300313246|ref|YP_003777338.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 575 bits (1483), Expect = e-165, Method: Compositional matrix adjust. Identities = 290/361 (80%), Positives = 320/361 (88%), Gaps = 1/361 (0%) Query: 1 MKPGIDLLTLWRGKGLARQIISSIATLALTIMLMVLLGSYAFYSTLFIFMPGAMSAPDSW 60 MK G ++WR KGLARQI++++ LA+ IMLMVLLGSYAFYST+FIF P AMSAPDSW Sbjct: 1 MKHGT-FFSIWRSKGLARQIVTAVVVLAVAIMLMVLLGSYAFYSTMFIFFPTAMSAPDSW 59 Query: 61 LPSPVEWSWILVTTLIGVAIAVWVAMRLSRRILTPLNSVATSLRRVAQGDLTARAAAERQ 120 LPSPVEW WILVTTLIG++IA+WVA+RLSRRILTPLNSVATSLRRVAQGDL+ARAAAERQ Sbjct: 60 LPSPVEWGWILVTTLIGLSIALWVAVRLSRRILTPLNSVATSLRRVAQGDLSARAAAERQ 119 Query: 121 PLDEASQLISDFNAMAERLERVQQERNFWNAAIAHELRTPVTILRGRLQGLSDGVFQPDP 180 PLDEA QLI+DFNAMAERLERVQQER FWNAAIAHELRTPVTILRGRLQGLSDGVFQP+P Sbjct: 120 PLDEAWQLINDFNAMAERLERVQQERIFWNAAIAHELRTPVTILRGRLQGLSDGVFQPEP 179 Query: 181 ALFASLLVQVEGLGRLIEDLRIVGLAESGHLRVQLQQTDLQQEIVTVLKACESALQDKGF 240 ALF+SLL QVEGLGRLIEDLRIVGLAESGHLRVQLQ+TDLQ +I+TVLKACE ALQ+KGF Sbjct: 180 ALFSSLLAQVEGLGRLIEDLRIVGLAESGHLRVQLQETDLQADIMTVLKACEPALQEKGF 239 Query: 241 AIALALRLQRTVCDPVRIRQALLALLENALQHATPGALRISTGSVDGQHYLRVEDSGPGL 300 + L +QR+ CDPVRIRQALLALLEN LQHA+PG LRIST S+ G H L VEDSGPG+ Sbjct: 240 RLLLETGVQRSRCDPVRIRQALLALLENVLQHASPGPLRISTRSLAGMHSLCVEDSGPGI 299 Query: 301 AATDAQMIFDAFQRGPRAASAPHKGSGLGLAVVRAIASAHHGTVDCQPSALGGTCFQLRW 360 AA+DAQMIFDAF RG RA A KGSGLGLAVVR IASAHHGT DC+ S LGG CF++RW Sbjct: 300 AASDAQMIFDAFHRGARAGDAQQKGSGLGLAVVRTIASAHHGTADCRASELGGACFEVRW 359 Query: 361 P 361 P Sbjct: 360 P 360 >gi|300313895|ref|YP_003777987.1| two-component system sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 475 Score = 140 bits (354), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 95/285 (33%), Positives = 143/285 (50%), Gaps = 4/285 (1%) Query: 71 LVTTLIGVAIAVWVAMRLSRRILTPLNSVATSLRRVAQGDLTARAAAERQPLDEASQLIS 130 ++ ++ V +A ++ +R+S + PL VA + R+A GD R E DE L Sbjct: 175 IIIAVVAVMLAAFLVVRISGVLTRPLTRVARATHRLASGDYAIRVEVESG--DEVGMLAQ 232 Query: 131 DFNAMAERLERVQQERNFWNAAIAHELRTPVTILRGRLQGLSDGVFQPDPALFASLLVQV 190 DFN +A LER ++ R + A ++HELRTP+ IL G+L+ L DGV QPD SL +V Sbjct: 233 DFNQLAMTLERNEKLRREFMADVSHELRTPLAILNGQLEALEDGVLQPDAQTLRSLKSEV 292 Query: 191 EGLGRLIEDLRIVGLAESGHLRVQLQQTDLQQEIVTVLKACESALQDKGFAIALALRLQR 250 E L +L+ DL + LA++G L + DL + +G ++ L Sbjct: 293 EHLNKLVGDLYDLSLADAGALTYRRADIDLAPLLRDSAALYSDRFSQRGMRLSCELPASM 352 Query: 251 TVC-DPVRIRQALLALLENALQHATPGALRISTGSVDGQH-YLRVEDSGPGLAATDAQMI 308 V D R++Q L L EN+L++ G + QH +L +DS PG+ + Sbjct: 353 PVHGDAARLQQLLSNLFENSLRYTDAGGRLQVHAHLQQQHWHLVFDDSEPGVPPEVMARL 412 Query: 309 FDAFQRGPRAASAPHKGSGLGLAVVRAIASAHHGTVDCQPSALGG 353 F+ F R + + G+GLGLA+ R I AH GT+ S LGG Sbjct: 413 FERFFRVEASRNRASGGAGLGLAICRRIVDAHQGTIGASASPLGG 457 >gi|300311272|ref|YP_003775364.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 401 Score = 135 bits (341), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 115/310 (37%), Positives = 158/310 (50%), Gaps = 32/310 (10%) Query: 69 WILVTTLIGVAIAVWVAMRLSRRILTPLNSVATSLRRVAQGDLTARAAAERQPLDEASQL 128 W + LI + + V + LS R+ L++VA + RR+A GD +ARA + +Q L Sbjct: 98 WFSLLVLIALPLIVGAGLMLSLRLSRHLDAVAVAARRLAAGDFSARALSCKQVPAALDAL 157 Query: 129 ISDFNAMAERLERVQQERNFWNAAIAHELRTPVTILRGRLQGLSDGVFQPDPALFASLLV 188 + D N MAERLER ++E + +AAIAHELRTP+T + RLQG+ DG+F P + ++ Sbjct: 158 MRDVNEMAERLERRERELHASSAAIAHELRTPLTAAKARLQGIMDGIFDRSPQQLSMIMR 217 Query: 189 QVEGLGRLIEDLRIVGLAESGHL---RVQLQQTDLQQE-------------IVTVLKACE 232 Q++ L RLI DL ++ L +G L R Q Q L +E + T L CE Sbjct: 218 QLDQLNRLISDLYLLSLVSAGQLALVRSQFQLRPLLEERLAWAAPSLRLLPMSTALYCCE 277 Query: 233 SALQDKGFAIALALRLQRTVCDPVRIRQALLALLENALQHATPGA-LRISTGSVDGQHYL 291 L L R R+ QA+ L++NAL++A G L IS G DGQ ++ Sbjct: 278 H----------LPLNADRD-----RLGQAISILIDNALRYAASGKLLTISAGLHDGQIHI 322 Query: 292 RVEDSGPGLAATDAQMIFDAFQRGPRAASAPHKGSGLGLAVVRAIASAHHGTVDCQPSAL 351 VED GPG A ++ D F R + S GSGLGLAV AI AH G + Sbjct: 323 DVEDDGPGFAPEHLELACDRFWRAEHSRSRHAGGSGLGLAVAVAICEAHGGKLSVHNRPA 382 Query: 352 GGTCFQLRWP 361 GG L P Sbjct: 383 GGARMHLELP 392 >gi|300312679|ref|YP_003776771.1| periplasmic sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 99.8 bits (247), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 92/297 (30%), Positives = 142/297 (47%), Gaps = 31/297 (10%) Query: 81 AVWVAMRLSRRILTPLNSVATSLRRVAQGDLTA----RAAAERQPLDEASQLISDFNAMA 136 +++V + RR L PL S+ +L + G L A A E QPL I N + Sbjct: 174 SIFVVLVAVRRGLRPLKSLQRNLEQRDHGKLGAIDGRGAPVELQPL------IVAMNELM 227 Query: 137 ERLERVQQERNFWNAAIAHELRTPVTILRGRLQGLSDGVFQPDPALFASLLVQVEGLGRL 196 R+ + +Q + + A +AH+LRTP+T L+ +L+ L D Q P SL + + R+ Sbjct: 228 ARINKGEQAQQNFMADVAHQLRTPLTGLKLQLELLHDK-HQDQPDTARSLAMMNSSVERM 286 Query: 197 IEDLRIV--------GLAESGHLRVQLQQTDLQQEIVTVLKACESALQDKGFAIALALRL 248 I R + GL ES L +++ + ++ + D GF LR Sbjct: 287 IRQSRQLLALARSEPGLFESRKLEELSLDKLVEESVQHFIEEADKKRIDLGF----DLRP 342 Query: 249 QRTVCDPVRIRQALLALLENALQHATP-GALRISTGSVDGQHYLRVEDSGPGLAATDAQM 307 R D + + L++NA++++ P G + + L VEDSGPG+A ++ Sbjct: 343 ARLRGDRFLLSDLIDNLIDNAVRYSPPHGTVTVRCLEEQDATVLSVEDSGPGIAPEHREL 402 Query: 308 IFDAFQRGPRAASAPHKGSGLGLAVVRAIASAHHG--TVDCQPSALGGTCFQLRWPV 362 IFD F R A+ GSGLGLA+VR IA H G +VDC+ GT F +R+P+ Sbjct: 403 IFDRFYR----ANDKVAGSGLGLAIVREIAHDHGGVISVDCKEQG-QGTIFTVRFPL 454 >gi|300309362|ref|YP_003773454.1| transmembrane sensory transduction histidine kinase for cobalt/zinc/ cadmium resistance transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 467 Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 87/293 (29%), Positives = 148/293 (50%), Gaps = 13/293 (4%) Query: 76 IGVAIAVWVAMRLSRRILTPLNSVATSLRRVAQGDLTARAAAERQPLDEASQLISDFNAM 135 +G +A+ ++ L R L PL ++A R V+ L R + P E +++ FN M Sbjct: 176 VGALLAILMSYFLVRSGLRPLRTMAAQTRAVSANRLDTRLDLQAAP-RELHEIVESFNEM 234 Query: 136 AERLERVQQERNFWNAAIAHELRTPVTILRGRLQ---GLSDGVFQPDPALFASLLVQVEG 192 +RL R Q+ + ++A +AH++RTP+ L + Q G G+ + AL +S + + E Sbjct: 235 LDRLHRSFQQLSQFSADLAHDVRTPLNNLMVQTQVALGKPRGIDEYQ-ALLSSNIEEYER 293 Query: 193 LGRLIEDLRIVGLAESGHLRVQLQQTDLQQEIVTVLKACESALQDKGFAIAL--ALRLQR 250 L R++E + + AE+ H+ +Q Q+ D+ QE+ + E + + + A RLQ Sbjct: 294 LSRMMESMLFLARAENAHVVLQWQELDVAQELTRIADYFEGIADEAQVRLVVQGAGRLQ- 352 Query: 251 TVCDPVRIRQALLALLENALQHATP--GALRISTGSVDGQHYLRVEDSGPGLAATDAQMI 308 D +R+A+ L+ NA+++ TP G +R+ + + V + G G+ A + + Sbjct: 353 --ADATLLRRAVGNLVANAIRY-TPADGVIRLQVDAAGDGMEISVSNPGAGIPAEQLERL 409 Query: 309 FDAFQRGPRAASAPHKGSGLGLAVVRAIASAHHGTVDCQPSALGGTCFQLRWP 361 FD F R + S+ SGLGLA+VR+I H G S T F LR+P Sbjct: 410 FDRFYRADPSRSSAGGSSGLGLAIVRSIMMLHGGQASVTSSPGQLTVFSLRFP 462 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,143,876 Number of extensions: 46676 Number of successful extensions: 339 Number of sequences better than 1.0e-08: 35 Number of HSP's gapped: 312 Number of HSP's successfully gapped: 35 Length of query: 362 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 276 Effective length of database: 1,212,660 Effective search space: 334694160 Effective search space used: 334694160 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)