BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3833.p (1033 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313244|ref|YP_003777336.1| multidrug efflux system transme... 1838 0.0 gi|300309819|ref|YP_003773911.1| acriflavin resistance transmemb... 1182 0.0 gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump pr... 1004 0.0 gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump pr... 987 0.0 gi|300309657|ref|YP_003773749.1| cation/multidrug efflux pump pr... 622 e-179 >gi|300313244|ref|YP_003777336.1| multidrug efflux system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1033 Score = 1838 bits (4761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 942/1026 (91%), Positives = 984/1026 (95%) Query: 1 MPRFFIDRPIFAWVLALFIVLLGVIAMSQLPIARYPSVAPPSVSINATYPGATPQTMNDG 60 MPRFFIDRPIFAWV+ALFIVL GVIAMSQLPIARYPSVAPP+VSINATYPGATPQTMNDG Sbjct: 1 MPRFFIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPTVSINATYPGATPQTMNDG 60 Query: 61 VISLIERELSGVKNLLYFESSADTSGSAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQ 120 VISLIERELSGVKNLLYFESSADTSG+AQISVTFKPGTDPELAQVDVQNKLKAIEARLPQ Sbjct: 61 VISLIERELSGVKNLLYFESSADTSGTAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQ 120 Query: 121 TVRQNGVTVESAASGFLLMVSLTSTDGRYDEVRLSDYLARNIVEELRRVDGVGRVQLFGA 180 TVRQNGVTVESAAS FLLMVSLTS DGRYDEVRL+DYLARNIVEELRR++GVGRVQLFGA Sbjct: 121 TVRQNGVTVESAASSFLLMVSLTSVDGRYDEVRLNDYLARNIVEELRRMEGVGRVQLFGA 180 Query: 181 EQAMRIWIDPFKLNAFGLTVGDISAAISQQNAQIAPGRLGDSPTVPGQQIAVPLTVQGQL 240 EQAMRIW+DPFKLNA+GLTV DIS AISQQNAQIAPGRLGD+P V GQQIA+PLTVQGQL Sbjct: 181 EQAMRIWLDPFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLTVQGQL 240 Query: 241 QSPAQFAAIVLKAKPDGSRVLLGDVARVELGAQSYAFSNREDGKPAGVAAVQLSPGANAV 300 QSPAQFAAIVLKAK DGSRVLLGDVARVELGAQSYAF+NRE+GKPAGVAAVQLSPGANAV Sbjct: 241 QSPAQFAAIVLKAKADGSRVLLGDVARVELGAQSYAFANRENGKPAGVAAVQLSPGANAV 300 Query: 301 RTAAAIQARMDELRPSLPPGMHFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQ 360 RTAAAIQARM+ELRPSLP GM FSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQ Sbjct: 301 RTAAAIQARMEELRPSLPQGMAFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQ 360 Query: 361 NVRYTIIPAIVAPIALLGTLAVMLAVGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIM 420 NVRYT+IPAIVAPIALLGTLAVM GYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIM Sbjct: 361 NVRYTVIPAIVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIM 420 Query: 421 AQEGLGPREATIKAMREITGAIVGITLVLTAVFIPMALAGGSVGVIYRQFALAMAVSILF 480 A EGLGPREATIKAM EITGAI+GITLVLTAVFIPMALAGGSVGVIYRQF++AMAVSILF Sbjct: 421 AHEGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSVAMAVSILF 480 Query: 481 SAFLALSLTPALCATLLQPVAPGHHDKRGFFGAFNRGFMRLTARYESVLGRLVARGLRMM 540 SAFLALSLTPALCATLL+PV GHHDKRGFFGAFNR F RLTARYES LGRL+ARGLRMM Sbjct: 481 SAFLALSLTPALCATLLRPVPAGHHDKRGFFGAFNRAFNRLTARYESALGRLIARGLRMM 540 Query: 541 LVYAALSALLVLGLQALPSAFLPEEDQGYFMTSFQLPADATAERTARAVDQFEQYLKTRQ 600 LVYAALS LLV+G+QALPSAFLPEEDQGYFMTSFQLPADAT ERTARAVDQFE+YLK R+ Sbjct: 541 LVYAALSGLLVVGMQALPSAFLPEEDQGYFMTSFQLPADATTERTARAVDQFERYLKGRE 600 Query: 601 DIGANLSVLGFGFSGSGPNAAMAFTELKDWKLRHGATAADEAHQAQLAMEAAGDGMVMSL 660 DIGANLSVLGFGFSGSGPNAAMAFTELKDWK R G+T+A EA AQ AME+ DGMVMSL Sbjct: 601 DIGANLSVLGFGFSGSGPNAAMAFTELKDWKERKGSTSAAEAMAAQAAMESGVDGMVMSL 660 Query: 661 LPPAIEELGNSSGFAMRLQDRANQGYDALKAAEAQLLALAAKSSKLSGVYSDGLPAGASI 720 LPPAIEELGNSSGFAMRLQDRANQGY ALKAAEAQLLALAAKS KLSGVYSDGLPAGAS+ Sbjct: 661 LPPAIEELGNSSGFAMRLQDRANQGYAALKAAEAQLLALAAKSRKLSGVYSDGLPAGASV 720 Query: 721 QLDVDRHKAAALGVSFANISDTLSAAMGSFYVNDFPNQGRMQQVILQARADARMQIEDVM 780 QL++DRHKAAALGVSF++ISDTLSAAMGSFYVNDFPN GRMQQVILQA+A ARMQ+EDVM Sbjct: 721 QLEIDRHKAAALGVSFSSISDTLSAAMGSFYVNDFPNAGRMQQVILQAQASARMQLEDVM 780 Query: 781 KLYVRNQSGGMVPLAELVKASWRVVPTQLQRYQGFPAVRISGSAAPGVASGEAMAEMERL 840 KLYVRNQSGGMVPLAELVKASWR PTQLQRYQGFPAVRISGSAAPGVASGEAMAEMERL Sbjct: 781 KLYVRNQSGGMVPLAELVKASWREAPTQLQRYQGFPAVRISGSAAPGVASGEAMAEMERL 840 Query: 841 AQQLPPGFAVAWTGQSLQERLSAAQAPLLMALSMLVVFLVLAALYESWSIPLSVMLVVPL 900 AQQLPPGFAVAWTGQSLQERLSAAQAP+LMALSMLVVFLVLAALYESWSIPLSVMLVVPL Sbjct: 841 AQQLPPGFAVAWTGQSLQERLSAAQAPMLMALSMLVVFLVLAALYESWSIPLSVMLVVPL 900 Query: 901 GLIGAVLAVILRDLPNDVFFKVGMITVIGLSAKNAILIVEFAKQLHTEGMGLVPAAIRAA 960 GL+GAV AVILRD+PNDVFFKVGMITVIGLSAKNAILIVEFA+QL +EGMGLV AAI+A+ Sbjct: 901 GLVGAVAAVILRDMPNDVFFKVGMITVIGLSAKNAILIVEFARQLRSEGMGLVEAAIKAS 960 Query: 961 VLRLRPILMTSLAFALGVVPLMLASGASAETQRAIGTGVFGGMVSATLLAVLFVPVFFVV 1020 VLRLRPILMTSLAFALGVVPLMLASGASAETQRAIGTGVFGGMVSAT+LAVLFVPVFFV+ Sbjct: 961 VLRLRPILMTSLAFALGVVPLMLASGASAETQRAIGTGVFGGMVSATVLAVLFVPVFFVL 1020 Query: 1021 VLGLTQ 1026 VLG Q Sbjct: 1021 VLGCAQ 1026 >gi|300309819|ref|YP_003773911.1| acriflavin resistance transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 1182 bits (3058), Expect = 0.0, Method: Compositional matrix adjust. Identities = 590/1029 (57%), Positives = 757/1029 (73%), Gaps = 2/1029 (0%) Query: 1 MPRFFIDRPIFAWVLALFIVLLGVIAMSQLPIARYPSVAPPSVSINATYPGATPQTMNDG 60 M +FFIDRP+FAWVLA+FI+L G +A++ LP+++YP++APP++ + ATYPGAT QT++D Sbjct: 1 MGKFFIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDS 60 Query: 61 VISLIERELSGVKNLLYFESSADTSGSAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQ 120 V SLIE+E++G L Y ES + +G QI++TF P T+P+LA VDVQN+LK +EARLP Sbjct: 61 VTSLIEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPA 120 Query: 121 TVRQNGVTVESAASGFLLMVSLTSTDGRYDEVRLSDYLARNIVEELRRVDGVGRVQLFGA 180 V Q GV V + S FLL + L+STDG+ D V L DYL+RN++ E++RV GVG+ QLFG Sbjct: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGT 180 Query: 181 EQAMRIWIDPFKLNAFGLTVGDISAAISQQNAQIAPGRLGDSPTVPGQQIAVPLTVQGQL 240 E+AMRIWIDP KL LT D++AAI QNA +A G LG P+ QQIA + V GQL Sbjct: 181 ERAMRIWIDPNKLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAATVVVNGQL 240 Query: 241 QSPAQFAAIVLKAKPDGSRVLLGDVARVELGAQSYAFSNREDGKPAGVAAVQLSPGANAV 300 SP QF I+L+A +G+ V L DVARVE+G QSY S R DGKP+ VQLSP ANA+ Sbjct: 241 TSPEQFGNIILRANANGATVRLRDVARVEVGGQSYDTSGRLDGKPSSFIGVQLSPTANAL 300 Query: 301 RTAAAIQARMDELRPSLPPGMHFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQ 360 TA A+ +M+EL P G+ +++PY+T+ FVKISI++VV+TLIEA+VLVFLVM+LFLQ Sbjct: 301 GTATAVHKKMEELAKYFPTGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQ 360 Query: 361 NVRYTIIPAIVAPIALLGTLAVMLAVGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIM 420 N+RYTIIP IV P+ALLGT A +L G+S+NVLTMFGMVLAIGI+VDDAIVVVENVERIM Sbjct: 361 NIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIM 420 Query: 421 AQEGLGPREATIKAMREITGAIVGITLVLTAVFIPMALAGGSVGVIYRQFALAMAVSILF 480 ++EGL P +AT KAM +I+GA++GITLVL AVFIPMA GG+VG IYRQF+L+M S++F Sbjct: 421 SEEGLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMVF 480 Query: 481 SAFLALSLTPALCATLLQPVAPG-HHDKRGFFGAFNRGFMRLTARYESVLGRLVARGLRM 539 S +A +LTPALCAT+L+PV G HH+K+GFFG FNR F + Y+ ++G ++ + R Sbjct: 481 SVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNSTASGYQGIIGGMLNKAGRY 540 Query: 540 MLVYAALSALLVLGLQALPSAFLPEEDQGYFMTSFQLPADATAERTARAVDQFEQYLKTR 599 M+VY + A + L LP++FLP EDQGY +T+ QLP A+ RT V Q E+Y Sbjct: 541 MIVYVLIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTSRTTAVVKQIEEYYLKD 600 Query: 600 QDIGANLSVLGFGFSGSGPNAAMAFTELKDWKLRHGATAADE-AHQAQLAMEAAGDGMVM 658 + ++VLG+ FSG+G NAA+ FT LKDW R + +AD A +A A D +V Sbjct: 601 PAVEHAIAVLGYSFSGNGQNAALVFTPLKDWSQRDKSQSADAIAGKAFGAFSQIKDAIVF 660 Query: 659 SLLPPAIEELGNSSGFAMRLQDRANQGYDALKAAEAQLLALAAKSSKLSGVYSDGLPAGA 718 L PP I ELGN++GF RLQDRA G+ AL A Q+L +A++S L+GV +GL Sbjct: 661 PLNPPPIPELGNATGFTFRLQDRAGLGHTALVQARNQILGMASQSKVLAGVRPEGLEDAP 720 Query: 719 SIQLDVDRHKAAALGVSFANISDTLSAAMGSFYVNDFPNQGRMQQVILQARADARMQIED 778 +QLD+DR KA ALGV F+ I+ LS A+GS YVNDFPN GR Q+VI+QA A R+Q ED Sbjct: 721 QLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNLGRQQRVIVQADAKRRLQPED 780 Query: 779 VMKLYVRNQSGGMVPLAELVKASWRVVPTQLQRYQGFPAVRISGSAAPGVASGEAMAEME 838 + LY RN SG MVP + V A W P QL RY G+PA++I+G AAPG ++GEAMAEME Sbjct: 781 LTNLYARNSSGTMVPFSAFVTAKWINGPVQLIRYNGYPAMKIAGGAAPGRSTGEAMAEME 840 Query: 839 RLAQQLPPGFAVAWTGQSLQERLSAAQAPLLMALSMLVVFLVLAALYESWSIPLSVMLVV 898 +LPPGF WTGQSL+E+ S QAP L ALS++ VFLVLAALYES SIPL+VMLVV Sbjct: 841 SFVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAVMLVV 900 Query: 899 PLGLIGAVLAVILRDLPNDVFFKVGMITVIGLSAKNAILIVEFAKQLHTEGMGLVPAAIR 958 PLG++GA+L V LR +PNDV+FKVGMI V+GLSAKNAILI+EFAK L +G GL+ A + Sbjct: 901 PLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGKGLIEATLE 960 Query: 959 AAVLRLRPILMTSLAFALGVVPLMLASGASAETQRAIGTGVFGGMVSATLLAVLFVPVFF 1018 A LR RPI+MTSLAF LGV+PL +ASGA + +QRAIGTGV GGM++AT+LAV VP+FF Sbjct: 961 AVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAIGTGVMGGMITATVLAVFLVPIFF 1020 Query: 1019 VVVLGLTQG 1027 VVV + +G Sbjct: 1021 VVVRKIFKG 1029 >gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 1004 bits (2596), Expect = 0.0, Method: Compositional matrix adjust. Identities = 509/1038 (49%), Positives = 713/1038 (68%), Gaps = 5/1038 (0%) Query: 1 MPRFFIDRPIFAWVLALFIVLLGVIAMSQLPIARYPSVAPPSVSINATYPGATPQTMNDG 60 M RFFIDRPIFAWV+A+ I+L G++++ L + +YP +APP V+I ATY GA+ +T+ D Sbjct: 1 MARFFIDRPIFAWVIAIIIMLGGMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLEDS 60 Query: 61 VISLIERELSGVKNLLYFESSADTSGSAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQ 120 V +IE+++ G+ NL Y +S+ ++GSA +S+TF GT+P++AQ+ VQNKL+ + ARLPQ Sbjct: 61 VTQVIEQQMKGLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLPQ 120 Query: 121 TVRQNGVTVESAASGFLLMVSLTSTDGRYDEVRLSDYLARNIVEELRRVDGVGRVQLFGA 180 V+ NGVTV A++ L+++SLTS D R + + D+++ + +++ RV+GVG V FG Sbjct: 121 AVQNNGVTVTKASTDILMVLSLTSDDPRITSIDIGDFISSTLTDQISRVEGVGDVTAFGT 180 Query: 181 EQAMRIWIDPFKLNAFGLTVGDISAAISQQNAQIAPGRLGDSPTVPGQQIAVPLTVQGQL 240 AMRIWIDP KL + L DI++A+ QN +++ G +G P PGQQI +T + +L Sbjct: 181 NYAMRIWIDPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATITARSKL 240 Query: 241 QSPAQFAAIVLKAKPDGSRVLLGDVARVELGAQSYAFSNREDGKPAGVAAVQLSPGANAV 300 +P +F I++K+ DGS V L DVARVELG +SY +++++GKP+ A+QL+ GANA+ Sbjct: 241 TTPDEFRNIIVKSSVDGSVVKLSDVARVELGGESYQVASQQNGKPSSALAIQLATGANAL 300 Query: 301 RTAAAIQARMDELRPSLPPGMHF--SLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLF 358 TA A++ ++ EL P P M ++ Y+T PFV++S+++VV+TLIEA+VLV L+MYLF Sbjct: 301 ATADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIVLVVLIMYLF 360 Query: 359 LQNVRYTIIPAIVAPIALLGTLAVMLAVGYSVNVLTMFGMVLAIGIIVDDAIVVVENVER 418 LQN+R T IPAI P+ LLGT ++ GYS+N LTMFGMVLAIG++VDDAIVVVENVER Sbjct: 361 LQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 420 Query: 419 IMAQEGLGPREATIKAMREITGAIVGITLVLTAVFIPMALAGGSVGVIYRQFALAMAVSI 478 +M++E L P+EAT K+M+EITGA+VGI +VL+AVFIPMA GGS GVIYRQF++ + ++ Sbjct: 421 LMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAM 480 Query: 479 LFSAFLALSLTPALCATLLQPVAPGHHDKRGFFGAFNRGFMRLTARYESVLGRLVARGLR 538 S +AL+LTPALCATLL+P A GH + FF FNR F R RY+ + L+ RG R Sbjct: 481 ALSVMVALTLTPALCATLLKPHAGGHVQQGRFFTWFNRSFDRSATRYQGGVAGLLKRGKR 540 Query: 539 MMLVYAALSALLVLGLQALPSAFLPEEDQGYFMTSFQLPADATAERTARAVDQFEQYLKT 598 +L+YA ++ + + LP++FLPEEDQG M QLP ATAE+TA V ++Y Sbjct: 541 GLLMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATVVKTVQEYFMN 600 Query: 599 R-QDIGANLSVLGFGFSGSGPNAAMAFTELKDWKLRHGA--TAADEAHQAQLAMEAAGDG 655 + + + + L+++G G G+ N A AF LKDW+ R GA +A++ +A + Sbjct: 601 KPESVESVLAIVGAGVGGNSQNGARAFIRLKDWEQRTGAGQSASELVRRANADLSKIRGA 660 Query: 656 MVMSLLPPAIEELGNSSGFAMRLQDRANQGYDALKAAEAQLLALAAKSSKLSGVYSDGLP 715 V + PPA+ LG SSGF + L+D G+DAL A Q L LA ++ L+ V + GL Sbjct: 661 RVFLMNPPAVRGLGQSSGFDLELKDVGGVGHDALLQARDQFLQLARSNALLANVRTTGLD 720 Query: 716 AGASIQLDVDRHKAAALGVSFANISDTLSAAMGSFYVNDFPNQGRMQQVILQARADARMQ 775 +++ +D KA AL ++ ++I+ TL+ AMG YVNDF + GR+++V +Q + RMQ Sbjct: 721 DTPQLRVAIDDRKADALSIATSDINATLATAMGGTYVNDFLSNGRVKKVYVQGDSAFRMQ 780 Query: 776 IEDVMKLYVRNQSGGMVPLAELVKASWRVVPTQLQRYQGFPAVRISGSAAPGVASGEAMA 835 +D+ + YVRN + MVP A + + W P+ L+RY G + I G A GV+SG AMA Sbjct: 781 ADDLNRWYVRNAASQMVPFAAFMSSQWTYGPSLLERYNGVSSFEIVGEPAAGVSSGTAMA 840 Query: 836 EMERLAQQLPPGFAVAWTGQSLQERLSAAQAPLLMALSMLVVFLVLAALYESWSIPLSVM 895 E+E+L QLP G WTG S QERLS QAP+L A+S+L VFL LAALYESWS+P +V+ Sbjct: 841 EVEKLVAQLPAGIGFEWTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPFAVI 900 Query: 896 LVVPLGLIGAVLAVILRDLPNDVFFKVGMITVIGLSAKNAILIVEFAKQLHTEGMGLVPA 955 L VPLG+IG VL + + NDV+F+VG++T +GLSAKNAILIVEFAKQLH G L A Sbjct: 901 LAVPLGIIGTVLLTGIFGMSNDVYFQVGLLTTVGLSAKNAILIVEFAKQLHESGKSLWEA 960 Query: 956 AIRAAVLRLRPILMTSLAFALGVVPLMLASGASAETQRAIGTGVFGGMVSATLLAVLFVP 1015 + A LRLRPILMTSLAF GV+PL +ASGA + ++RAIGTGV GGM+SATLL + FVP Sbjct: 961 TLEAVQLRLRPILMTSLAFMFGVLPLAVASGAGSASRRAIGTGVLGGMLSATLLGIFFVP 1020 Query: 1016 VFFVVVLGLTQGRNAVTP 1033 +F+ ++ R A P Sbjct: 1021 LFYYLIGAWLDRRAARKP 1038 >gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1049 Score = 987 bits (2552), Expect = 0.0, Method: Compositional matrix adjust. Identities = 522/1047 (49%), Positives = 707/1047 (67%), Gaps = 14/1047 (1%) Query: 1 MPRFFIDRPIFAWVLALFIVLLGVIAMSQLPIARYPSVAPPSVSINATYPGATPQTMNDG 60 M RFFIDRPIFAWVLA+ ++L G++++ LPIA+YP++APP+++I A YPGA+ +T+ D Sbjct: 1 MARFFIDRPIFAWVLAIIVMLAGIVSVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDT 60 Query: 61 VISLIERELSGVKNLLYFESSADTSGSAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQ 120 V +IE+++ G+ L Y S++++SGS I++TF+ GT+P+ AQV VQNKL LP Sbjct: 61 VTQIIEQKMKGLDRLSYMASTSESSGSVTITLTFENGTNPDTAQVQVQNKLSLATPLLPS 120 Query: 121 TVRQNGVTVESAASGFLLMVSLTSTDGRYDEVRLSDYLARNIVEELRRVDGVGRVQLFGA 180 V+Q G+TV +A+ FL +++ TS DG LSDY+A N+ + + RV+GVG LFG+ Sbjct: 121 EVQQQGITVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVEGVGDTTLFGS 180 Query: 181 EQAMRIWIDPFKLNAFGLTVGDISAAISQQNAQIAPGRLGDSPTVPGQQIAVPLTVQGQL 240 + AMRIW+DP KLN++GLT D+ AI QNAQ++ G+LG P QQI +T Q +L Sbjct: 181 QYAMRIWLDPNKLNSYGLTPLDVKNAIQAQNAQVSSGQLGGLPAAENQQINATITAQTRL 240 Query: 241 QSPAQFAAIVLKAKPDGSRVLLGDVARVELGAQSYAFSNREDGKPAGVAAVQLSPGANAV 300 ++ QF IVL+ G++V L DVAR+ELG++SY R +GKPA A++L+ GANA+ Sbjct: 241 RTADQFQNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANAL 300 Query: 301 RTAAAIQARMDELRPSLPPGMHFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQ 360 T AI R+ EL P GM PY+T PFV+ISI++VV+TLIEA+VLVFLVMYLFLQ Sbjct: 301 DTVKAIDKRVAELEKFFPTGMKVQKPYDTTPFVRISIEEVVRTLIEAVVLVFLVMYLFLQ 360 Query: 361 NVRYTIIPAIVAPIALLGTLAVMLAVGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIM 420 N R T+IP I P+ LLGT V+ G+++N LTMF MVLAIG++VDDAIVVVENVER+M Sbjct: 361 NFRATLIPTIAVPVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 AQEGLGPREATIKAMREITGAIVGITLVLTAVFIPMALAGGSVGVIYRQFALAMAVSILF 480 ++EGL P++AT K+M +I+GA+VG+ LVL AVF+PMA GS GVIYRQF++ + ++ Sbjct: 421 SEEGLPPKQATRKSMGQISGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTL 480 Query: 481 SAFLALSLTPALCATLLQPVAPGHH-DKRGFFGAFNRGFMRLTARYESVLGRLVARGLRM 539 S +AL LTPALCATLL+P A GH GFFG FNR F R RY+ ++ ++ RG R Sbjct: 481 SVLVALVLTPALCATLLKPAAKGHALATTGFFGWFNRQFDRSNIRYQGIVRHMLGRGWRY 540 Query: 540 MLVYAALSALLVLGLQALPSAFLPEEDQGYFMTSFQLPADATAERTARAVDQFEQY--LK 597 M YA L AL+V G LP FLP+EDQG QLP+ AT RT + Q EQ+ + Sbjct: 541 MAAYAVLLALVVAGFMKLPVGFLPDEDQGTLFAIMQLPSGATKARTDEVIRQVEQHFLVD 600 Query: 598 TRQDIGANLSVLGFGFSGSGPNAAMAFTELKDWKLRHGA--TAADEAHQAQLAMEAAGDG 655 ++ + +V GF F+GSG N AF +LK W R G + D A +A A D Sbjct: 601 QKEAVSGVFAVSGFSFAGSGQNMGFAFIKLKPWDERKGPGLSVTDVAAKAGAAFANIRDA 660 Query: 656 MVMSLLPPAIEELGNSSGFAMRLQDRANQGYDALKAAEAQLLALAAKSSKLSGVYSDGLP 715 V + PPA+ ELGN++GF + L+D AN G+ AL A QLL + +L V +GL Sbjct: 661 RVFAFAPPAVSELGNATGFDLMLKDEANLGHAALMQARNQLLGELMQDKRLVAVRPNGLE 720 Query: 716 AGASIQLDVDRHKAAALGVSFANISDTLSAAMGSFYVNDFPNQGRMQQVILQARADARMQ 775 +L VD KA ALGV+ ++I+DT++ A GS YVNDF ++GR+++V+LQ A RM Sbjct: 721 DTPEFRLSVDTDKAGALGVAMSDINDTIATAWGSSYVNDFIDKGRVKKVMLQGDAQYRML 780 Query: 776 IEDVMKLYVRNQSGGMVPLAELVKASWRVVPTQLQRYQGFPAVRISGSAAPGVA-SGEAM 834 DV + YVRN +G MVP + ASW +L+RY G P++ I G A PG A SGEAM Sbjct: 781 PSDVDRWYVRNSAGTMVPFSAFSTASWTSGSPRLERYNGVPSMEILGMALPGAASSGEAM 840 Query: 835 AEMERLAQQLPPGFAVAWTGQSLQERLSAAQAPLLMALSMLVVFLVLAALYESWSIPLSV 894 A +E ++PPG WTG SLQE+ S+ + +L +S+L+VFL LAALYESW++P SV Sbjct: 841 AIVEAALAKMPPGIGYEWTGLSLQEKASSGKTGILYGVSILIVFLALAALYESWAVPFSV 900 Query: 895 MLVVPLGLIGAVLAVILRDLPNDVFFKVGMITVIGLSAKNAILIVEFAKQLHTEGMGLVP 954 +LVVPLG+ GA+L +L NDV+F+VG++T IGL+ KNAILIVEFAK L+ G LV Sbjct: 901 ILVVPLGVFGALLGAMLTWKMNDVYFQVGLLTTIGLACKNAILIVEFAKDLYEHGKSLVE 960 Query: 955 AAIRAAVLRLRPILMTSLAFALGVVPLMLASGASAETQRAIGTGVFGGMVSATLLAVLFV 1014 A + A +RLRPILMTSLAF LGV+P++L SGA A Q A+GT V GGM+S T+LAV FV Sbjct: 961 ATMEAVRMRLRPILMTSLAFILGVLPMVLGSGAGAGAQHALGTAVIGGMLSGTVLAVFFV 1020 Query: 1015 PVFFVVVLGL--------TQGRNAVTP 1033 P+FFV+++ L QG+ A++P Sbjct: 1021 PLFFVIIMTLFGRKPADAPQGQPAISP 1047 >gi|300309657|ref|YP_003773749.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1071 Score = 622 bits (1604), Expect = e-179, Method: Compositional matrix adjust. Identities = 417/1038 (40%), Positives = 622/1038 (59%), Gaps = 25/1038 (2%) Query: 3 RFFIDRPIFAWVLALFIVLLGVIAMSQLPIARYPSVAPPSVSINATYPGATPQTMNDGVI 62 +FFIDRPIFA VL++ ++L GV+AM QLPI+ YP V PPSV + A YPGA P+ + + V Sbjct: 5 KFFIDRPIFAGVLSVLLLLGGVLAMLQLPISEYPEVVPPSVVVRAQYPGANPKVIAETVA 64 Query: 63 SLIERELSGVKNLLYFESSADTSGSAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQTV 122 S +E +++GV+N+LY +S A++ G+ I+V F+ G DP+ AQ VQN++ RLP+ V Sbjct: 65 SPLEEQINGVENMLYMQSQANSDGNLTITVNFRLGVDPDKAQQLVQNRVSQALPRLPEDV 124 Query: 123 RQNGVTVESAASGFLLMVSLTSTDGRYDEVRLSDYLARNIVEELRRVDGVGRVQLFGA-E 181 ++ GVT ++ ++V LTS D RYD L +Y N+ + L R+ GVG V LFG+ Sbjct: 125 QRLGVTTLKSSPTLTMVVHLTSPDNRYDTTYLRNYAVLNVKDRLARIQGVGEVGLFGSGN 184 Query: 182 QAMRIWIDPFKLNAFGLTVGDISAAISQQNAQIAPGRLGDSPTVPGQQIAVPLTVQGQLQ 241 AMR+W+DP K+ GLT D+ AI +QN Q+A G +G SP+ P + + + QG+L+ Sbjct: 185 YAMRVWLDPNKVAQRGLTATDVVRAIREQNVQVAAGVIGASPSSPETPLQLSVNAQGRLK 244 Query: 242 SPAQFAAIVLKAKPDGSRVLLGDVARVELGAQSYAFSNREDGKPAGVAAVQLSPGANAVR 301 + +F I+LKA PDG+ LGDVARVEL A Y + D KPA + +PGANA+ Sbjct: 245 TEGEFRDIILKASPDGATTRLGDVARVELAASEYGLRSLLDNKPAVAIPIFQAPGANALD 304 Query: 302 TAAAIQARMDELRPSLPPGMHFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQN 361 + ++A M EL P + +S+ Y+ FV+ SI+ VV TL+EA+ LV +V+ +FLQ Sbjct: 305 VSTQVRAAMKELSADFPSSVSYSIVYDPTQFVRASIEAVVHTLLEAIALVVIVVIIFLQT 364 Query: 362 VRYTIIPAIVAPIALLGTLAVMLAVGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIMA 421 R +IIP + P++++GT ++ML GY++N L++FGMVLAIGI+VDDAIVVVENVER + Sbjct: 365 WRASIIPLLAVPVSIIGTFSLMLGFGYTINALSLFGMVLAIGIVVDDAIVVVENVERNIG 424 Query: 422 QEGLGPREATIKAMREITGAIVGITLVLTAVFIPMALAGGSVGVIYRQFALAMAVSILFS 481 GL PR+AT +AM+E++G I+ I L L AVF+P+A G G Y+QFA+ +A+S + S Sbjct: 425 -AGLSPRDATYRAMQEVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTVIS 483 Query: 482 AFLALSLTPALCATLLQPVAPGHHDKRGFFGAFNRGFM------------RLTARYESVL 529 AF +L+L+PAL A LL+ GH DK + F+ R + Y + Sbjct: 484 AFNSLTLSPALAALLLK----GHGDKPDWLTRQMDRFLGGFFIRFNRFFNRASDNYGHGV 539 Query: 530 GRLVARGLRMMLVYAALSALLVLGLQAL-PSAFLPEEDQGYFMTSFQLPADATAERTARA 588 ++ R M VY L A LG+ + P F+P +D+ Y + QLP A+ +R+ Sbjct: 540 TGVIKRKGATMGVYVLLLA-ATLGISYIVPGGFVPGQDKQYLVAFAQLPNGASIDRSEEV 598 Query: 589 VDQFEQYLKTRQDIGANLSVLGFGFSG--SGPNAAMAFTELKDWKLRHGATAADEAHQAQ 646 + + + + + ++ G +G + +A + F LK ++ R + A A Sbjct: 599 MRKMSDIMLKEPGVASAIAFPGLSINGFTNSSSAGIVFVGLKPFEERKSKDLSGNAIAAS 658 Query: 647 LAME--AAGDGMVMSLLPPAIEELGNSSGFAMRLQDRANQGYDALKAAEAQLLALAAKSS 704 L + + + PP + LG GF M+++DR GY L A + AAK Sbjct: 659 LNKKFGSIKEAFTAVFPPPPVMGLGTLGGFKMQIEDRDALGYAELDKAAQAFMKAAAKEP 718 Query: 705 KLSGVYSDGLPAGASIQLDVDRHKAAALGVSFANISDTLSAAMGSFYVNDFPNQGRMQQV 764 L ++S + +++DR KA LG+ ++ +T+ +GS YVNDF GR+ QV Sbjct: 719 ALGPMFSSYQINVPQLDVELDRVKAKQLGIPVTDVFNTMQIYLGSLYVNDFNRFGRVYQV 778 Query: 765 ILQARADARMQIEDVMKLYVRNQSGGMVPLAELVKASWRVVPTQLQRYQGFPAVRISGSA 824 QA A R + ED+ +L RN +G MVPL+ +VK P + RY G+ A I+G Sbjct: 779 RAQADAPFRAKAEDIAQLKTRNDAGEMVPLSSVVKVKQTFGPEMVVRYNGYTAADINGGP 838 Query: 825 APGVASGE-AMAEMERLAQQLPPGFAVAWTGQSLQERLSAAQAPLLMALSMLVVFLVLAA 883 APG +S + A A LP G WT + Q+ L+ + +S+L+VFLVLAA Sbjct: 839 APGYSSDQAQAAAERVAAATLPRGIKFEWTDLTYQKILAGNAGVWVFPISVLLVFLVLAA 898 Query: 884 LYESWSIPLSVMLVVPLGLIGAVLAVILRDLPNDVFFKVGMITVIGLSAKNAILIVEFAK 943 LYES ++PL+V+L+VP+ ++ A+ V L N++F ++G++ ++GLSAKNAILIVEFA+ Sbjct: 899 LYESLTLPLAVILIVPMSILAALTGVWLTRGDNNIFTQIGLMVLVGLSAKNAILIVEFAR 958 Query: 944 QLHTEGMGLVPAAIRAAVLRLRPILMTSLAFALGVVPLMLASGASAETQRAIGTGVFGGM 1003 +L +G V AAI A+ LRLRPILMTS+AF +GVVPL+ +SGA +E + A+G VF GM Sbjct: 959 ELEMQGRTAVQAAIEASRLRLRPILMTSIAFIMGVVPLVTSSGAGSEMRHAMGIAVFFGM 1018 Query: 1004 VSATLLAVLFVPVFFVVV 1021 + TL + PVF+V++ Sbjct: 1019 LGVTLFGLFLTPVFYVLL 1036 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,841,481 Number of extensions: 112683 Number of successful extensions: 626 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 548 Number of HSP's successfully gapped: 17 Length of query: 1033 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 938 Effective length of database: 1,170,045 Effective search space: 1097502210 Effective search space used: 1097502210 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 135 (56.6 bits)