BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3830.p
         (275 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313220|ref|YP_003777312.1| L-asparaginase/archaeal Glu-tRN...   547   e-157
gi|300310776|ref|YP_003774868.1| L-asparaginase/archaeal Glu-tRN...   339   2e-94

>gi|300313220|ref|YP_003777312.1| L-asparaginase/archaeal
           Glu-tRNAGln amidotransferase subunit D protein
           [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  547 bits (1410), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 267/275 (97%), Positives = 272/275 (98%)

Query: 1   MQIASENMNNDAWLKLAKRVNTLLAQSDVDGIVITHGTDTIEETAYFLDLVVKSKKPVVI 60
           MQIASENMNNDAWLKL KRVNTLLAQSDVDGIVITHGTDTIEETAYFLDLVVKSKKPVVI
Sbjct: 1   MQIASENMNNDAWLKLGKRVNTLLAQSDVDGIVITHGTDTIEETAYFLDLVVKSKKPVVI 60

Query: 61  VGAMRPSTAISADGPINLYNAVLLAGSKEAVGKGVLVALNDQINAGREVTKTNTSTMDTF 120
           VGAMRPSTAISADGPINLYNAVLLAGSKEA+GKGVLV LNDQINAGREVTKTNTST+DTF
Sbjct: 61  VGAMRPSTAISADGPINLYNAVLLAGSKEAIGKGVLVTLNDQINAGREVTKTNTSTLDTF 120

Query: 121 KTPELGFLGYIQGNKPYFYRQSTRKNTVDTPFDIMNLDKLPQVDIVYGYANMNPIALNAF 180
           KTPELGFLGYIQG+KPYFYRQSTRKNTVDTPFDIMNLDKLPQVDIVYGYANMNPIALNAF
Sbjct: 121 KTPELGFLGYIQGSKPYFYRQSTRKNTVDTPFDIMNLDKLPQVDIVYGYANMNPIALNAF 180

Query: 181 VAAGAQGIIHAGVGDGSLNNTVVPALTEARKKGVVIVRSSRVGQGIVARNGEADDDQLDF 240
           VAAGAQGIIHAGVGDGSLNNTVVP+LTEARKKGVVIVRSSRVGQGIVARNGEADDD+LDF
Sbjct: 181 VAAGAQGIIHAGVGDGSLNNTVVPSLTEARKKGVVIVRSSRVGQGIVARNGEADDDKLDF 240

Query: 241 VVSDTLNPQKARILLMLALTKTTDTKEIQKMFWEY 275
           VVSDTLN QKARILLMLALTKTTDTKEIQKMFWEY
Sbjct: 241 VVSDTLNAQKARILLMLALTKTTDTKEIQKMFWEY 275


>gi|300310776|ref|YP_003774868.1| L-asparaginase/archaeal
           Glu-tRNAGln amidotransferase subunit D protein
           [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score =  339 bits (869), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 165/275 (60%), Positives = 210/275 (76%), Gaps = 1/275 (0%)

Query: 1   MQIASENMNNDAWLKLAKRVNTLLAQSDVDGIVITHGTDTIEETAYFLDLVVKSKKPVVI 60
            QI SE+ N++  +KL KRV+ LL Q+DVDGIVITHGTDTIEETAYFL+LV+KS KPVV+
Sbjct: 83  FQIGSESFNDERLIKLGKRVSELLKQNDVDGIVITHGTDTIEETAYFLNLVLKSDKPVVV 142

Query: 61  VGAMRPSTAISADGPINLYNAVLLAGSKEAVGKGVLVALNDQINAGREVTKTNTSTMDTF 120
           VG+MRP TA+ ADG +NLY+AVL+AGSKEA GKG LV +ND+I++GR+VTK+NT  ++TF
Sbjct: 143 VGSMRPGTALGADGALNLYDAVLVAGSKEAAGKGTLVVMNDEIHSGRDVTKSNTFKVETF 202

Query: 121 KTPELGFLGYIQGNKPYFYRQSTRKNTVDTPFDIMNLDKLPQVDIVYGYANMNPIALNAF 180
           ++P  G LGY+  NK  FYR   R +T  T FDI  +  LP+VDIVY Y N++  A +AF
Sbjct: 203 RSP-YGPLGYVVENKLSFYRLPARPHTTQTEFDIDKISSLPRVDIVYNYGNVSRTAYDAF 261

Query: 181 VAAGAQGIIHAGVGDGSLNNTVVPALTEARKKGVVIVRSSRVGQGIVARNGEADDDQLDF 240
           VAAGA+ IIH G G+GS+   +VP L E R KGV ++R+SR G G+V RNGE  DD+ D+
Sbjct: 262 VAAGAKAIIHDGTGNGSVAEQIVPVLQEVRSKGVQVIRASRTGSGVVIRNGEQPDDKFDW 321

Query: 241 VVSDTLNPQKARILLMLALTKTTDTKEIQKMFWEY 275
           VV+D  N QKARIL  LALTKT D KE+QK+ W+Y
Sbjct: 322 VVTDDQNAQKARILAELALTKTNDPKELQKIMWKY 356


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 829,565
Number of extensions: 35499
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 2
Length of query: 275
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,222,130
Effective search space: 233426830
Effective search space used: 233426830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)