BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3829.p
         (500 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313219|ref|YP_003777311.1| AMP nucleosidase [Herbaspirillu...   999   0.0  

>gi|300313219|ref|YP_003777311.1| AMP nucleosidase [Herbaspirillum
           seropedicae SmR1]
          Length = 502

 Score =  999 bits (2584), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/501 (96%), Positives = 491/501 (98%), Gaps = 1/501 (0%)

Query: 1   MFATEKFTNPDAAYARVLEIYEHNTAILRDAFRQFSRGQGM-EQRVRACYPFVRITTEKS 59
           MFATEKFT+PDAAYARVLEIYEHNTAILRDAFRQFS GQ M +QRVRACYPFVRITTEKS
Sbjct: 2   MFATEKFTDPDAAYARVLEIYEHNTAILRDAFRQFSSGQPMDQQRVRACYPFVRITTEKS 61

Query: 60  THADTRQSFGFVAGPGCYQTTLTRPKLFHQYLLAQFKLVLQNHEVPLEVGVSDMPIPVHF 119
           TH DTRQSFGFVAGPGCYQTTLTRPKLFHQYLLAQF+L+LQNHEVPLEVGVSDMPIPVHF
Sbjct: 62  THTDTRQSFGFVAGPGCYQTTLTRPKLFHQYLLAQFRLILQNHEVPLEVGVSDMPIPVHF 121

Query: 120 AFPEGIHVEGSLDPEHLRTLPDYFDLPDLAAMDDRIANGSYEVDNGAWREGPHPLALFTG 179
           AFPEGIHVEGSLDPEHLRTLPD+FDLPDLA MDDRIANG+YEVDNGAWREGPHPLALFTG
Sbjct: 122 AFPEGIHVEGSLDPEHLRTLPDHFDLPDLATMDDRIANGTYEVDNGAWREGPHPLALFTG 181

Query: 180 PRIDYSLHRLRHYTATSPDQFQRYVLFTNYAFYVDEFVRLGRRLMEPTDDPDELAYRRQY 239
           PRIDYSLHRLRHYTATSPDQFQRYVLFTNYAFYVDEFVRLGRRLMEPTDDPDELAYRRQY
Sbjct: 182 PRIDYSLHRLRHYTATSPDQFQRYVLFTNYAFYVDEFVRLGRRLMEPTDDPDELAYRRQY 241

Query: 240 TAFVEPGNVTTWSANQAGTDVRTASGVAPARQPQMPAYHLQRADGSGITLVNIGVGPSNA 299
           TAFVEPGNVTTWSANQ G + R ASGVAPARQPQMPAYHLQRADGSGITLVNIGVGPSNA
Sbjct: 242 TAFVEPGNVTTWSANQEGAETRAASGVAPARQPQMPAYHLQRADGSGITLVNIGVGPSNA 301

Query: 300 KTVTDHVAVLRPHGWLMLGHCAGLSASQRMGDYVLAHAYVRDDHVLDDDLPLWVPIPALA 359
           KTVTDHVAVLRPHGWLMLGHCAGLSASQRMGDYVLAHAYVRDDHVLDDDLPLWVPIPALA
Sbjct: 302 KTVTDHVAVLRPHGWLMLGHCAGLSASQRMGDYVLAHAYVRDDHVLDDDLPLWVPIPALA 361

Query: 360 EVQLALQDAVASITQLDGYELKRIMRTGTVASVDDRNWELRDHRMPLLRFSQSRAIALDM 419
           EVQLALQDAVASIT+LDGYELKRIMRTGTVASVDDRNWELRDHR PLLRFSQSRAIALDM
Sbjct: 362 EVQLALQDAVASITRLDGYELKRIMRTGTVASVDDRNWELRDHRTPLLRFSQSRAIALDM 421

Query: 420 ESATVAANGFRFRVPYGTLLCVSDKPLHGEIKLPGMANTFYEQRVAQHLQIGIRALELLR 479
           ESATVAANGFRFRVPYGTLLCVSDKPLHGEIKLPGMANTFYEQRVAQHLQIGIRALELLR
Sbjct: 422 ESATVAANGFRFRVPYGTLLCVSDKPLHGEIKLPGMANTFYEQRVAQHLQIGIRALELLR 481

Query: 480 NNGVEQLHSRKLRSFAEPAFR 500
           NNG+EQ+HSRKLRSFAEPAFR
Sbjct: 482 NNGIEQVHSRKLRSFAEPAFR 502


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,706,236
Number of extensions: 76482
Number of successful extensions: 187
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 411
Effective length of database: 1,198,455
Effective search space: 492565005
Effective search space used: 492565005
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)