BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3820.p
         (604 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313210|ref|YP_003777302.1| protease with the C-terminal PD...  1132   0.0  

>gi|300313210|ref|YP_003777302.1| protease with the C-terminal PDZ
           domain-containing protein [Herbaspirillum seropedicae
           SmR1]
          Length = 598

 Score = 1132 bits (2928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/593 (91%), Positives = 566/593 (95%)

Query: 5   TPIRYSITSLDPASHLYDITVTVDTPAADGQVFSLPAWIPGSYMIREFGKNIVTLRGESN 64
           TPIRY ITSLDPASHL+D++VTVDTPAA+GQVFSLPAWIPGSYMIREFGKNIV LRGE N
Sbjct: 3   TPIRYRITSLDPASHLFDVSVTVDTPAAEGQVFSLPAWIPGSYMIREFGKNIVQLRGECN 62

Query: 65  GRKVAVKKRDKHTWQAAPCKGALTLHYQVYAWDLSVRTAHLDRTHGFFNGTSVFLAAHGF 124
           GRKV VKK DKHTWQAAPCKGALTLHYQVYAWDLSVRTAHLDRTHGFFNGTSVFL AHGF
Sbjct: 63  GRKVGVKKLDKHTWQAAPCKGALTLHYQVYAWDLSVRTAHLDRTHGFFNGTSVFLCAHGF 122

Query: 125 EDGPHVVDIRRPAGEDFKRWRVATAMSELKAKRYGFGTYVAQNYDELIDHPVELGDFALA 184
           E G HVV++ RP GE+FKRWRVATAMSELKAKRYGFGTYVAQNYDELIDHPVE+GDFALA
Sbjct: 123 EQGEHVVELVRPEGEEFKRWRVATAMSELKAKRYGFGTYVAQNYDELIDHPVEIGDFALA 182

Query: 185 SFQAHGVPHDVVITGRVPNLDLARLCDDLKKICEAQIAFFEPRSKRAPMDRYVFMTLAVG 244
           +FQAHGVPHDVVITGRVPNLDLARLC+DLKKICEAQIAFFEPRSKRAPMDRYVFMTLAVG
Sbjct: 183 TFQAHGVPHDVVITGRVPNLDLARLCEDLKKICEAQIAFFEPRSKRAPMDRYVFMTLAVG 242

Query: 245 DGYGGLEHRASTALICARADLPVKGKPEQSDGYRTYLGLCSHEYFHTWNVKRIKPAVFAP 304
           DGYGGLEHRASTALICARADL VKGKPEQ+DGYRTYLGLCSHEYFHTWNVKRIKPAVFAP
Sbjct: 243 DGYGGLEHRASTALICARADLSVKGKPEQTDGYRTYLGLCSHEYFHTWNVKRIKPAVFAP 302

Query: 305 YDLRQENYTSLLWLFEGFTSYYDDLFLVRTGVIDTEQYLKLVGKTITGVLRGTGRKKQSV 364
           YDLRQENYTSLLWLFEGFTSYYDDLFLVRTGVIDT+ YLKLVGKT+TGVLRGTGRKKQSV
Sbjct: 303 YDLRQENYTSLLWLFEGFTSYYDDLFLVRTGVIDTDNYLKLVGKTVTGVLRGTGRKKQSV 362

Query: 365 AESSFDAWVKYYRQDENASNAIVSYYTKGSLVALGLDLSICEQTRGRRSLDDVMRGLWTR 424
           AESSFDAWVKYYRQDENASNAIVSYYTKGSLVALGLDL+I  QTRGRRSLDDVMRGLW R
Sbjct: 363 AESSFDAWVKYYRQDENASNAIVSYYTKGSLVALGLDLTIRTQTRGRRSLDDVMRGLWVR 422

Query: 425 YGRDFYHGKQQGVAEDEILAVMEELSGADLKRFYDRHIRGTEDVPLEDLLPAFGVAYDAC 484
           YGRDFY GKQQGV EDEILA+MEELSGADLKRF+DRHIRGTEDVP EDLLPAFGVAY+A 
Sbjct: 423 YGRDFYEGKQQGVPEDEILAIMEELSGADLKRFHDRHIRGTEDVPFEDLLPAFGVAYEAN 482

Query: 485 LPADAKPWLGARIGKEGGDAKLAAVYEGGPAMQAGLSAGDKLVAIDGLRVPASGADGLLA 544
           +PADAKPWLGARIGKEGGDAKLAAVYEGGPAM AGLSAGDKLVAIDGLRVPASG DGLLA
Sbjct: 483 VPADAKPWLGARIGKEGGDAKLAAVYEGGPAMLAGLSAGDKLVAIDGLRVPASGPDGLLA 542

Query: 545 RYRLNDTVRIHAFRRDELMEFSVRLKADSAPQVSLSAMGKPVAVVRRRLAWLQ 597
           RYRLNDTVRIHAFRRDELMEFSVRLKAD+APQVSL A+ KPVA  R+R AWL 
Sbjct: 543 RYRLNDTVRIHAFRRDELMEFSVRLKADTAPQVSLQALAKPVAAARQRAAWLH 595


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,125,747
Number of extensions: 97418
Number of successful extensions: 250
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 513
Effective length of database: 1,188,985
Effective search space: 609949305
Effective search space used: 609949305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)