BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3815.p
         (600 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313205|ref|YP_003777297.1| TPR repeat containing protein [...   976   0.0  

>gi|300313205|ref|YP_003777297.1| TPR repeat containing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 600

 Score =  976 bits (2523), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/599 (84%), Positives = 553/599 (92%)

Query: 1   LKKTIALLTSSLLLTACSSFQQPGDKANAQAAQDQKTAAAKAGNRKKAPKAKVQPQEDAL 60
           +KKTIALLTSSLLLTAC+SFQ  G+KANA AAQDQK+A+AKA  RKK PKAKVQ QEDAL
Sbjct: 1   MKKTIALLTSSLLLTACASFQPSGEKANATAAQDQKSASAKAAARKKTPKAKVQQQEDAL 60

Query: 61  PAVELTEDILYKVLTAEIAFQRGQWQSAYVTMLSAAQQTRDPRLAKRAAEMAVAARQAGE 120
           PAVEL+EDILYKVLTAEIAFQRGQWQ AYVTML+AAQQTRDPRLAKRAAEMAV ARQ  E
Sbjct: 61  PAVELSEDILYKVLTAEIAFQRGQWQPAYVTMLAAAQQTRDPRLAKRAAEMAVTARQPSE 120

Query: 121 ALVAVRLWTELAPHSDEALQNYLGLIMLSDSVDEIEPLLTQRLADAAPQARGPMIMQVQR 180
           ALVAVRLWTELAPHSDEALQNYLGLIMLSDSVDEIEPLLTQRLADAAPQARGPM++Q+QR
Sbjct: 121 ALVAVRLWTELAPHSDEALQNYLGLIMLSDSVDEIEPLLTQRLADAAPQARGPMLLQIQR 180

Query: 181 LLARAKDKKASYTILQNITKPYGDLLETHLALAQGAFGLGDAATAQREAATALKIKPDSE 240
           LL RAKDK+AS+ ILQ I++PYGDL+ETHLALAQGAF +GD   AQREA  A+KIKPDSE
Sbjct: 181 LLVRAKDKQASFAILQKISQPYGDLMETHLALAQGAFSVGDTTYAQREARAAMKIKPDSE 240

Query: 241 LAVLTAAQVAFTNADATKLVTDFLRKYPDSREVRVAYARSLVEQKDYKQARTQFETLLKE 300
           LAVLTAAQVA  N +ATKLVT+FLRKYPD+REVRVAYAR+LVEQKDYK ARTQFE LLKE
Sbjct: 241 LAVLTAAQVAPDNKEATKLVTEFLRKYPDAREVRVAYARTLVEQKDYKDARTQFEALLKE 300

Query: 301 DGEDATTLFALGVLSAQTDQLKDAEYYLQRYLQVLSAQPEDDRDPSQALLLLSRIAEERR 360
           DGED TTLFALGVLSAQTDQLKDAEYYLQRYLQVLSA PE+DRDPSQA+LLLSRIAEERR
Sbjct: 301 DGEDPTTLFALGVLSAQTDQLKDAEYYLQRYLQVLSAMPEEDRDPSQAILLLSRIAEERR 360

Query: 361 DLDSALRYLDQAEPGSEGYVNIQVRRAQLLARKNDIDAARKALEDAQADSNNDGEQLQLM 420
           D+D ALRYLD+ EPG+EGYVNIQVRRAQLLARK+DI+ ARKALE AQ++S NDGEQLQL+
Sbjct: 361 DIDGALRYLDRGEPGTEGYVNIQVRRAQLLARKSDIEGARKALEAAQSESTNDGEQLQLL 420

Query: 421 LAESSLLRDANRNQEAADVLKGGLQRFPNNTDLLYDYSMVLEKLGKYDEMEKALRRVIQL 480
            AES+LLRDANRNQEAADV+K GL+RFPNNTDLLYDY+MVL+KLGKYDEME +LRRVI+L
Sbjct: 421 QAESALLRDANRNQEAADVIKAGLERFPNNTDLLYDYAMVLDKLGKYDEMEASLRRVIKL 480

Query: 481 APGNQQAYNALGYSLADRNVRLPEALELIQKAADMAPEDPFIADSLGWVQFRMGRTEQAE 540
           APGNQ AYNALGYSLADRNVRLPEALELI+KAA+MAPED FIADSLGWV FRMGR ++AE
Sbjct: 481 APGNQHAYNALGYSLADRNVRLPEALELIRKAAEMAPEDAFIADSLGWVLFRMGRLDEAE 540

Query: 541 AQLRRAYGLRPDVEIGVHLGEVLWANGKQDEARKVWREVSLKEPQNEVLKSTLARLNVK 599
            Q+RRAYGLRPD EIGVHLGEVLW  GKQDEARK+WR+V+ K+P NEVLKSTL RLNVK
Sbjct: 541 TQMRRAYGLRPDAEIGVHLGEVLWTRGKQDEARKIWRDVAQKDPANEVLKSTLTRLNVK 599


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.129    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,563,769
Number of extensions: 59290
Number of successful extensions: 335
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 328
Number of HSP's successfully gapped: 4
Length of query: 600
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 509
Effective length of database: 1,188,985
Effective search space: 605193365
Effective search space used: 605193365
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)