BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3808.p
         (291 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313198|ref|YP_003777290.1| hypothetical protein Hsero_3909...   533   e-153

>gi|300313198|ref|YP_003777290.1| hypothetical protein Hsero_3909
           [Herbaspirillum seropedicae SmR1]
          Length = 291

 Score =  533 bits (1372), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 264/291 (90%), Positives = 274/291 (94%)

Query: 1   MDHITPSASGTGHSPESSPLGKSSPYPTHYDPSLLFPIPRAPKRAELQISGTLPFFGADF 60
           MDH  PSAS   HSPESSPLGKSS YPTHYDPSLLFPIPRAPKRAELQISGTLPFFG D 
Sbjct: 1   MDHTNPSASPASHSPESSPLGKSSQYPTHYDPSLLFPIPRAPKRAELQISGTLPFFGVDL 60

Query: 61  WTAYEISWLNLRGKPQIAIASFMVPADSPNIIESKSFKLYLNSFNQERLESSAQLLDKLR 120
           WTAYEISWLNLRGKPQIAIA+FMVPADSPNIIESKSFKLYLNSFNQERLES+ QL+DK+R
Sbjct: 61  WTAYEISWLNLRGKPQIAIATFMVPADSPNIIESKSFKLYLNSFNQERLESADQLIDKMR 120

Query: 121 TDLSAAAGANVQVSLTESAQFGQVQFGELSGLLLDRLDVDIEPVSGNPHPDGSQLRANTD 180
           TDLSAAAGA VQV+LTE AQFGQ+QFGELSGLLLDRLDV+IE  +   HPDGSQLRANT+
Sbjct: 121 TDLSAAAGAQVQVALTEPAQFGQLQFGELSGLLLDRLDVEIEAAASGAHPDGSQLRANTE 180

Query: 181 EATVEETLVSHLLKSNCPVTSQPDWGSVQIHYVGAPIDQERLLKYIIGFREHNEFHEQCV 240
           EATVEETLVSHLLKSNCPVTSQPDWGSVQI YVGAPIDQERLLKYIIGFREHNEFHEQCV
Sbjct: 181 EATVEETLVSHLLKSNCPVTSQPDWGSVQIQYVGAPIDQERLLKYIIGFREHNEFHEQCV 240

Query: 241 ERIFTDILRHCKPQKLAVYARYTRRGGLDINPWRSNFSSAKPPSQLRNARQ 291
           ERIFTDILR+CKPQKLAVYARYTRRGGLDINPWRSNFSSAKPPSQLRNARQ
Sbjct: 241 ERIFTDILRYCKPQKLAVYARYTRRGGLDINPWRSNFSSAKPPSQLRNARQ 291


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 949,398
Number of extensions: 39767
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 207
Effective length of database: 1,222,130
Effective search space: 252980910
Effective search space used: 252980910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)