BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3801.p
         (321 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313191|ref|YP_003777283.1| transmembrane protein [Herbaspi...   489   e-139
gi|300309983|ref|YP_003774075.1| transmembrane protein [Herbaspi...   251   7e-68

>gi|300313191|ref|YP_003777283.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score =  489 bits (1259), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 290/321 (90%), Positives = 305/321 (95%), Gaps = 4/321 (1%)

Query: 1   MKKILLALLLAMTSLSLIMSPAEAKRLGGGGSFGKQSSNYSRQAAPSAPSSPSYSQPAAT 60
           MKK+LLALLL++TSLSLIMSPAEAKRLGGGGSFGKQSSNYSRQAAPS+PS    SQP+AT
Sbjct: 1   MKKLLLALLLSITSLSLIMSPAEAKRLGGGGSFGKQSSNYSRQAAPSSPSY---SQPSAT 57

Query: 61  PYRPSAPTATPQSAPMSRPASPWRNMLGGALLGFGLGALMSHFGIGGAMGGMLGSLLTIL 120
           PYRPS P AT QSAPM +PASPWRN+LGGALLGFGLGALMSHFGIGGAMGG+LGSLLTI 
Sbjct: 58  PYRPSTPAATLQSAPMPKPASPWRNVLGGALLGFGLGALMSHFGIGGAMGGLLGSLLTIA 117

Query: 121 LLCVAVIFLVRLFARGRQAQSNNPAYATPMPGVSPIGSAAGATPEIGSGLRDINPPPAAL 180
           LLC AVIFL+R+FARGR+AQ+NNPAYATPMPGVSPIGSAAGATPEIGSGLRDINPPPA L
Sbjct: 118 LLCAAVIFLIRMFARGREAQNNNPAYATPMPGVSPIGSAAGATPEIGSGLRDINPPPA-L 176

Query: 181 PGAGYAASAQPAQIQHWGIPEGFDTAGFVRNAKTYFIRLQAAWDRADVNDIREFTTPEMF 240
            G  Y A+AQPAQIQ WGIPEGFDTAGFVRNAKTYFIRLQAAWDRADVNDIREFTTPEMF
Sbjct: 177 QGNAYGAAAQPAQIQQWGIPEGFDTAGFVRNAKTYFIRLQAAWDRADVNDIREFTTPEMF 236

Query: 241 AELRMQLTERGAAPNATDVVQLDAELLGIETMAFDYLATVRFQGLIKEAPDVSAEPFAEI 300
           AELRMQLTERGAAPNATDVVQLDA+LLGIETMAFDYLATVRFQGLIKEAPDVSAEPFAEI
Sbjct: 237 AELRMQLTERGAAPNATDVVQLDAQLLGIETMAFDYLATVRFQGLIKEAPDVSAEPFAEI 296

Query: 301 WNLSKPLNGSGGWVLAGIQQI 321
           WNLSKPLNGSGGWVLAGIQQ+
Sbjct: 297 WNLSKPLNGSGGWVLAGIQQV 317


>gi|300309983|ref|YP_003774075.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score =  251 bits (640), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 125/221 (56%), Positives = 152/221 (68%), Gaps = 3/221 (1%)

Query: 101 SHFGIGGAMGGMLGSLLTILLLCVAVIFLVRLFARGRQAQSNNPAYATPMPGVSPIGSAA 160
           SHFG+GGA+  M+ ++LT+ L+ +A++F+VR+F R  +A   +                A
Sbjct: 20  SHFGLGGALASMISTILTVALIALAIMFVVRMFRRKSEA---SQPAPAWAGAAPQAADNA 76

Query: 161 GATPEIGSGLRDINPPPAALPGAGYAASAQPAQIQHWGIPEGFDTAGFVRNAKTYFIRLQ 220
            ATP+IGS L+      AA  G          Q   +G+P GFDT GFVRNAKTYFIRLQ
Sbjct: 77  SATPQIGSMLKTDQSAAAATQGGFGGGFGNAEQAPAYGVPAGFDTVGFVRNAKTYFIRLQ 136

Query: 221 AAWDRADVNDIREFTTPEMFAELRMQLTERGAAPNATDVVQLDAELLGIETMAFDYLATV 280
           AAWD+AD+NDIREFTTPEMFAELR+Q+ ERGAA N TDVV LDAE+LG+ET+  DYLA+V
Sbjct: 137 AAWDKADINDIREFTTPEMFAELRLQIQERGAASNQTDVVSLDAEVLGVETVGNDYLASV 196

Query: 281 RFQGLIKEAPDVSAEPFAEIWNLSKPLNGSGGWVLAGIQQI 321
           +F G IKE P  S   FAEIWNLSKP  G GGWVLAGIQQI
Sbjct: 197 KFFGFIKEDPTASPAQFAEIWNLSKPAAGQGGWVLAGIQQI 237


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 760,546
Number of extensions: 25774
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 2
Length of query: 321
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 236
Effective length of database: 1,217,395
Effective search space: 287305220
Effective search space used: 287305220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)