BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3800.p
         (202 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313190|ref|YP_003777282.1| hypothetical protein Hsero_3901...   377   e-106

>gi|300313190|ref|YP_003777282.1| hypothetical protein Hsero_3901
           [Herbaspirillum seropedicae SmR1]
          Length = 202

 Score =  377 bits (968), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/202 (92%), Positives = 196/202 (97%)

Query: 1   MSVLPDPTTLALDPMKPAAAVINHLLAQEPWARSTLMAHAGKVACIDTGVMPLRLKVSGD 60
           MSVLPDP TLALDPMKPAAA INHLLAQEPWAR+TL+AHAGKVACIDTGVM LRLKV+GD
Sbjct: 1   MSVLPDPATLALDPMKPAAAAINHLLAQEPWARNTLIAHAGKVACIDTGVMQLRLKVAGD 60

Query: 61  GYLQEVPADAPANVTIRLKLSDLPLIAANRERAVSYVKLEGDADFANAISQLSQKLRWDA 120
           GYLQ+VPADAPANVTIR+KLSDLPLIAANRERAVSYVKLEGDADFANAISQLSQ LRWDA
Sbjct: 61  GYLQDVPADAPANVTIRIKLSDLPLIAANRERAVSYVKLEGDADFANAISQLSQTLRWDA 120

Query: 121 EDDLSRVVGDVAAIRIVAGARELFDAARNTGRKLSENLAEYFLEEQPMLIRPRQLQDFSA 180
           EDDLSRVVGDVAA RIV+GAR LF+AAR+TGRKL++NLAEYFLEEQPMLIRPRQLQDFSA
Sbjct: 121 EDDLSRVVGDVAATRIVSGARGLFEAARSTGRKLTDNLAEYFLEEQPMLIRPRQLQDFSA 180

Query: 181 DVVRLRDDLERLSKRIEKLERR 202
           DVVRLRDDLERLSKRIEKLERR
Sbjct: 181 DVVRLRDDLERLSKRIEKLERR 202


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 623,339
Number of extensions: 25238
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,236,335
Effective search space: 149596535
Effective search space used: 149596535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)