BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3789.p
         (405 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313177|ref|YP_003777269.1| membrane-bound lytic murein tra...   771   0.0  

>gi|300313177|ref|YP_003777269.1| membrane-bound lytic murein
           transglycosylase [Herbaspirillum seropedicae SmR1]
          Length = 410

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/405 (91%), Positives = 387/405 (95%)

Query: 1   MSLNRFIKRAALRRLSVPVLAVSVAVLLAACQTTPLTTPAPGQPGPRPVVQPGPAMRATT 60
           MSLNRF K ++LRRLSVP +A+SVAVLLAACQTTP+TTP   QP PRP  QPGPAMRAT+
Sbjct: 6   MSLNRFTKLSSLRRLSVPAMAISVAVLLAACQTTPVTTPGVSQPSPRPTAQPGPAMRATS 65

Query: 61  FSQLPGWTNDDLREAWPAVQSSCSVMIRKPEWRAACSAAQQVNANDLGFLRQYFETYFTP 120
           FSQLPGW NDDLREAWPAVQSSCSVMIRKPEWRAAC+AAQQVN +DLG LRQYFETYFTP
Sbjct: 66  FSQLPGWNNDDLREAWPAVQSSCSVMIRKPEWRAACAAAQQVNGSDLGLLRQYFETYFTP 125

Query: 121 YQLFNPDGTDTGLVTGYYEPLLRGSRRRGGPYQTPLYQAPEDLLTIDLASAYPELKNLRL 180
           YQL+N DGTDTGLVTGYYEPLLRGSRRR GPYQTPLYQAP+DLLTID+AS YPELKNLRL
Sbjct: 126 YQLYNQDGTDTGLVTGYYEPLLRGSRRRSGPYQTPLYQAPDDLLTIDMASVYPELKNLRL 185

Query: 181 RGKLVGRKVVPYPTRAELMQGNTLAGKEIVWVDDPVEAFFLQVQGSGRVYLPESRETIRL 240
           RGK+VGRKVVPYPTRAELMQGN LAGKEIVWVDDPVEAFFLQVQGSGRVYLPESRETIRL
Sbjct: 186 RGKVVGRKVVPYPTRAELMQGNALAGKEIVWVDDPVEAFFLQVQGSGRVYLPESRETIRL 245

Query: 241 AYADQNGRPYKSIGRYLVDKGEMELSQASAQNIKAWVQANPARKEELLNANPSYVFFKEE 300
           AYADQNGRPYKSIGRYLVDKGEMELSQASAQNIKAWVQANPARKEELLNANPSYVFFKEE
Sbjct: 246 AYADQNGRPYKSIGRYLVDKGEMELSQASAQNIKAWVQANPARKEELLNANPSYVFFKEE 305

Query: 301 KLLDPSKGPKGAQGIPLTPQRSIAIDPQHVPLGAPVFLSTTMPNSERPLQRLVVAQDTGG 360
           KL DPSKGPKGAQGIPLTPQRSIAIDPQHVPLGAPVFL+TT+PNS+RPLQRLVVAQDTGG
Sbjct: 306 KLPDPSKGPKGAQGIPLTPQRSIAIDPQHVPLGAPVFLATTLPNSDRPLQRLVVAQDTGG 365

Query: 361 AIRGVVRADYFWGFGDEAEDRAGSMKQRGMMWVLLPKGMTPPGGN 405
           AIRGVVRADYFWGFGDEAEDRAGSMKQRGMMWVLLPKGMTPP GN
Sbjct: 366 AIRGVVRADYFWGFGDEAEDRAGSMKQRGMMWVLLPKGMTPPSGN 410


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,242,380
Number of extensions: 52773
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 318
Effective length of database: 1,207,925
Effective search space: 384120150
Effective search space used: 384120150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)