BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3786.p
         (186 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313174|ref|YP_003777266.1| signal peptide protein [Herbasp...   358   e-100

>gi|300313174|ref|YP_003777266.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 184

 Score =  358 bits (919), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/186 (94%), Positives = 180/186 (96%), Gaps = 2/186 (1%)

Query: 1   MTKMKSLVAKIAFAGVAAFAIQSPSYAFGLDGMSLEYGTGNSTQLARLGAQFNWGPNWNF 60
           MTK+KSLVAKIAFAGVAA A+QSPSYA  +DGMSLEYGTGNSTQL RLGAQFNWGPNWNF
Sbjct: 1   MTKLKSLVAKIAFAGVAAIAVQSPSYA--IDGMSLEYGTGNSTQLVRLGAQFNWGPNWNF 58

Query: 61  WQSNGTHIGGYWDLSLANWRMNHYNKTNDSANLVDLGLTPVLRFQRDDGKGFYGEAGIGV 120
           WQSNGTHIGGYWDLSLANWRMNHYN TNDS NLVDLGLTPVLRFQRDDGKGFYGEAGIGV
Sbjct: 59  WQSNGTHIGGYWDLSLANWRMNHYNNTNDSGNLVDLGLTPVLRFQRDDGKGFYGEAGIGV 118

Query: 121 HLFSKLYRNNDKVLSTAFQFGDHVGAGYVFSNGLDLGIRLQHFSNGGIKEPNGGVNFAVA 180
           HLFSKLYRNNDKVLSTAFQFGDH+GAGYVFSNGLDLGIRLQHFSNGGIK+PNGGVNFAVA
Sbjct: 119 HLFSKLYRNNDKVLSTAFQFGDHIGAGYVFSNGLDLGIRLQHFSNGGIKQPNGGVNFAVA 178

Query: 181 RVAYKF 186
           RVAYKF
Sbjct: 179 RVAYKF 184


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 607,081
Number of extensions: 27354
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,241,070
Effective search space: 131553420
Effective search space used: 131553420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)