BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3785.p
         (310 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313173|ref|YP_003777265.1| gluconolactonase [Herbaspirillu...   545   e-156
gi|300310377|ref|YP_003774469.1| gluconolactonase [Herbaspirillu...   139   4e-34

>gi|300313173|ref|YP_003777265.1| gluconolactonase [Herbaspirillum
           seropedicae SmR1]
          Length = 302

 Score =  545 bits (1404), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 260/301 (86%), Positives = 277/301 (92%)

Query: 10  SSPSLSADTITAISPEPMLLGESPLWHAEEGALYWIDIPGKAVHKLVLETQQHQRWDMPE 69
           S PS SA  +T   PEPMLLGESPLWHA+E ALYWIDIPGKAVH+L  E+ QH+RWD+PE
Sbjct: 2   SVPSPSAAAVTVAFPEPMLLGESPLWHAQEAALYWIDIPGKAVHRLHPESGQHKRWDLPE 61

Query: 70  EPGSIVKHAQGGLVVALRTGMFHLNTGNGALSALLAAPYDTSRIRFNDGRCDASGRFWCG 129
           EPGSIV+HAQGGLVVA+RTGMFHLNT  GAL+ LLAAPYD+SRIRFNDGRCDASGRFWCG
Sbjct: 62  EPGSIVRHAQGGLVVAIRTGMFHLNTDTGALTLLLAAPYDSSRIRFNDGRCDASGRFWCG 121

Query: 130 TIYEPRDREGGTLYCFERNALRDAHHAVTTSNGLAFSVDQRLMYHANTPAHRINVYDYDL 189
           TIYEPRDR+GGTLYCFERNALRDAHHAV TSNGLAFS DQRLMYHANTPAHRIN+YDYDL
Sbjct: 122 TIYEPRDRDGGTLYCFERNALRDAHHAVVTSNGLAFSSDQRLMYHANTPAHRINLYDYDL 181

Query: 190 ATGQTSNCRLLRQFDSDKNAPDYGGRPDGAAVDSEGAYWCAMFEGGRVLRLSPAGEILQE 249
           ATG TSNCRLLRQFDSDK+APDYGGRPDGAAVDS+GAYWCAMFEGGRVLRLSP GEILQE
Sbjct: 182 ATGATSNCRLLRQFDSDKSAPDYGGRPDGAAVDSQGAYWCAMFEGGRVLRLSPQGEILQE 241

Query: 250 IRLPARCPTMVAFGGTDLRTLFITTGRNGRSQAELAQYPFSGHVLAIRVAVAGRLEYSYR 309
           IRLPARCPTMVAFGG DLRTL+ITTGRNGRS AELAQYP SG VLA+RV V G+LEYSYR
Sbjct: 242 IRLPARCPTMVAFGGDDLRTLYITTGRNGRSPAELAQYPESGCVLAVRVDVPGQLEYSYR 301

Query: 310 P 310
           P
Sbjct: 302 P 302


>gi|300310377|ref|YP_003774469.1| gluconolactonase [Herbaspirillum
           seropedicae SmR1]
          Length = 292

 Score =  139 bits (349), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 91/279 (32%), Positives = 134/279 (48%), Gaps = 19/279 (6%)

Query: 29  LGESPLWHAEEGALYWIDIPGKAVHKLVLETQQHQRWDMPEEPGSIVKHAQ-GGLVVALR 87
           LGE  LW     +++W DI    +     +T   + W MPE        A    L++ L 
Sbjct: 13  LGEGVLWCDRSQSVFWTDIHASRLWNHDPQTGLTRSWGMPERLCCYAFTADPQQLLIGLE 72

Query: 88  TGMFHLNTGNGALSALLAAPYDTSRIRFNDGRCDASGRFWCGTIYEPRDREG-------G 140
           + +   N   G ++ +     D    R NDGRCD  GRF  GT+ E   R          
Sbjct: 73  SRLAFFNLSTGTIAPICRIEDDLPSTRLNDGRCDRQGRFVFGTLNEDAGRAPIASFYRLN 132

Query: 141 TLYCFERNALRDAHHAVTTSNGLAFSVDQRLMYHANTPAHRINVYDYDLATGQTSNCRLL 200
           T    ER +L     ++  SN + FS+D +LMYH ++ A +I V DYD A+G     R+ 
Sbjct: 133 TDLTLERLSL----PSIAISNSICFSLDGKLMYHCDSMAGKIMVCDYDTASGAVGGQRVF 188

Query: 201 RQFDSDKNAPDYGGRPDGAAVDSEGAYWCAMFEGGRVLRLSPAGEILQEIRLPARCPTMV 260
               +D   P   G PDG+ +D+EG  W A + G RV+R +P G I + + +P   P+ V
Sbjct: 189 ----ADVAQP---GGPDGSTIDAEGYLWNAQWGGARVVRYAPDGRIDRVVAIPTSQPSCV 241

Query: 261 AFGGTDLRTLFITTGRNGRSQAELAQYPFSGHVLAIRVA 299
           AFGG    TL++TT   G S  + A  P +G + A+ +A
Sbjct: 242 AFGGAQFDTLYVTTAHEGMSAEQRAADPQAGALFAVALA 280


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,070,671
Number of extensions: 50270
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 2
Length of query: 310
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 225
Effective length of database: 1,217,395
Effective search space: 273913875
Effective search space used: 273913875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)