BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3783.p
         (391 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313171|ref|YP_003777263.1| fumarylacetoacetate hydrolase f...   768   0.0  

>gi|300313171|ref|YP_003777263.1| fumarylacetoacetate hydrolase
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 391

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/391 (95%), Positives = 388/391 (99%)

Query: 1   MAHTFSPQAHLPEDHAQATLIGRVWQPEVGPVVVKIDADGAYDLTLIAATSSQLLELDDP 60
           MAHTFS QAHLPEDHAQATLIGR+WQP VGPV+V+IDADGAYDLTLIAATSS+LLELD+P
Sbjct: 1   MAHTFSLQAHLPEDHAQATLIGRIWQPGVGPVLVRIDADGAYDLTLIAATSSELLELDNP 60

Query: 61  AAAVRAASNMTRIATLQELLDNADAAQRDTSRPWLLAPIDLQAVKASGVTFVASMLERVI 120
           AAAVR+A+NMTRIATLQELLDNADAA RDTSRPWLLAPIDLQAVKASGVTFVASMLERVI
Sbjct: 61  AAAVRSATNMTRIATLQELLDNADAAGRDTSRPWLLAPIDLQAVKASGVTFVASMLERVI 120

Query: 121 EEQARGDAGKAESVRRAISAVIGENLSSVVPGSPEAARLKEVLLEQGVWSQYLEVGIGPD 180
           EEQARGDAGKAESVR+AI+AVIG+NLSSVVPGSPEAARLKEVLL+QGVWSQYLEVGIGPD
Sbjct: 121 EEQARGDAGKAESVRKAITAVIGDNLSSVVPGSPEAARLKEVLLDQGVWSQYLEVGIGPD 180

Query: 181 AEIFTKAQPMSSVGLGDEVGIHPKSAWNNPEPEIVLAINSRGKVVGATLGNDVNLRDFEG 240
           AEIFTKAQPMSSVGLGDEVGIHPKSAWNNPEPEIVLAINSRGKVVGATLGNDVNLRDFEG
Sbjct: 181 AEIFTKAQPMSSVGLGDEVGIHPKSAWNNPEPEIVLAINSRGKVVGATLGNDVNLRDFEG 240

Query: 241 RSALLLGKAKDNNASCAVGPFIRLFDANFSIDDVRRAELTMRVDGTEGFTLKGSSSMSMI 300
           RSALLLGKAKDNNASCAVGPFIRLFDANFSIDDVRRAELTMRVDGTEGFTLKGSSSMSMI
Sbjct: 241 RSALLLGKAKDNNASCAVGPFIRLFDANFSIDDVRRAELTMRVDGTEGFTLKGSSSMSMI 300

Query: 301 SRDPLQLVEHAIGPNHQYPDGLVLFLGTMFAPTQDRFGPGQGFTHQVADLVTISTPKLGA 360
           SRDPLQLVEHAIGPNHQYPDGLVLFLGTMFAPTQDRFGPGQGFTHQVAD+VTISTPKLGA
Sbjct: 301 SRDPLQLVEHAIGPNHQYPDGLVLFLGTMFAPTQDRFGPGQGFTHQVADIVTISTPKLGA 360

Query: 361 LVNTVNFSDQTAPWTFGLTALFKNLANRKLI 391
           LVNTVNFSDQTAPWTFGLTALFKNLA+RKLI
Sbjct: 361 LVNTVNFSDQTAPWTFGLTALFKNLADRKLI 391


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,276,360
Number of extensions: 54872
Number of successful extensions: 178
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 304
Effective length of database: 1,207,925
Effective search space: 367209200
Effective search space used: 367209200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)