BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3780.p (244 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 481 e-137 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 333 7e-93 gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPa... 325 2e-90 gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPa... 298 2e-82 gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte... 285 3e-78 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 481 bits (1239), Expect = e-137, Method: Compositional matrix adjust. Identities = 233/244 (95%), Positives = 242/244 (99%) Query: 1 MSAIVKIKDLHKSFGSNKVLNGVSLEVQQGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGD 60 MSAIVKIKDLHKSFGSNKVLNGVSL+VQ+GQMVAIIGKSGSGKSTLLRCLNGLEKVDAGD Sbjct: 1 MSAIVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGD 60 Query: 61 IHVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTDEAKQI 120 I VCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMST++AK I Sbjct: 61 IQVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKTI 120 Query: 121 AHKVLQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVL 180 AHKVLQLVGLENKK+AYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVL Sbjct: 121 AHKVLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVL 180 Query: 181 KVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEMGPPDELFSNPRTAELQKFV 240 KVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWE+GPPDELFS+P+TAELQKFV Sbjct: 181 KVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTAELQKFV 240 Query: 241 ASDL 244 +SDL Sbjct: 241 SSDL 244 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 333 bits (854), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 158/239 (66%), Positives = 201/239 (84%), Gaps = 1/239 (0%) Query: 4 IVKIKDLHKSFGSNKVLNGVSLEVQQGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIHV 63 IV+I ++ K FGSN+VLNG+SL V++GQ+VAIIG+SGSGKST+LRC+NGLE +D G I V Sbjct: 3 IVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSITV 62 Query: 64 CGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTDEAKQIAHK 123 GH + H + +L ELRK VG+VFQ YNLFPHLTVE NI L+ +KK +T+ A++ A K Sbjct: 63 AGHKLTHKHE-HLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARETAIK 121 Query: 124 VLQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKVM 183 VL+ VGL++K++AYPEQLSGGQ QRVAIARSLAM P++MLFDEVTSALDPELTAEVLKVM Sbjct: 122 VLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKVM 181 Query: 184 EDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEMGPPDELFSNPRTAELQKFVAS 242 E+LARGGMTM+LVTHEM FAR++AD+ VFMHQG+VWE P +E F++P+T E ++F+ + Sbjct: 182 EELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQFIGA 240 >gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 325 bits (834), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 159/244 (65%), Positives = 193/244 (79%), Gaps = 2/244 (0%) Query: 1 MSAIVKIKDLHKSFGSNKVLNGVSLEVQQGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGD 60 M +V+++ +HK FGSN VL GVS +V +G++VAIIGKSGSGKST LRC+N LE++DAG Sbjct: 1 MHTVVELQGVHKRFGSNTVLRGVSFQVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQ 60 Query: 61 IHVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTDEAKQI 120 I VCGH +H L+LR LR+ VGIVFQ YNLFPHLTV +NITL T +K+M D+A+ + Sbjct: 61 ISVCGHALHAAG-LDLRGLRRDVGIVFQGYNLFPHLTVLQNITLGPTAVKRMPADQAQTL 119 Query: 121 AHKVLQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVL 180 A +VL VGL +K AYPEQLSGGQ QRVAIARSLA+ P+LMLFDEVTSALDPELT EVL Sbjct: 120 AQQVLARVGLADKAGAYPEQLSGGQQQRVAIARSLALQPQLMLFDEVTSALDPELTGEVL 179 Query: 181 KVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEMGPPDELFSNPRTAELQKFV 240 KVME +A GMTM+LVTHEMAFAR++AD ++FMHQGQVWE G P E+ P T EL+ FV Sbjct: 180 KVMEQMASEGMTMILVTHEMAFARRVADQVIFMHQGQVWEQGGP-EILDAPVTPELRSFV 238 Query: 241 ASDL 244 + L Sbjct: 239 GTGL 242 >gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 264 Score = 298 bits (764), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 149/241 (61%), Positives = 191/241 (79%), Gaps = 2/241 (0%) Query: 4 IVKIKDLHKSFGSNKVLNGVSLEVQQGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIHV 63 IVK+ ++KSFG N+VL GVS EV +G+M+AIIG SGSGKST LRC++ LE +D+G I V Sbjct: 26 IVKLDQVYKSFGDNQVLKGVSFEVARGEMIAIIGASGSGKSTALRCIDRLETIDSGSIEV 85 Query: 64 CGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTDEAKQIAHK 123 G + P +++L +LR++VGIVFQSYNLFPHL V N+ LAL +K+ EA+++A Sbjct: 86 AGIRVDDP-QVDLHKLRREVGIVFQSYNLFPHLNVLENVMLALRHVKQQDKAEARRVALA 144 Query: 124 VLQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKVM 183 L VGL+ K AYPEQLSGGQ QRVAIARSLAMAP++MLFDEVTSALDP+LT EVL+VM Sbjct: 145 ALAQVGLDEKANAYPEQLSGGQQQRVAIARSLAMAPKVMLFDEVTSALDPQLTGEVLRVM 204 Query: 184 EDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEMGPPDELFSNPRTAELQKFVASD 243 EDLA GMTM+LVTHEM FA+++AD +++MHQG+VWE+G P E+ +P T ELQ F+A+D Sbjct: 205 EDLAANGMTMLLVTHEMNFAKRVADRIIYMHQGRVWEVG-PGEMLDHPYTPELQAFLAAD 263 Query: 244 L 244 L Sbjct: 264 L 264 >gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 285 bits (728), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 136/238 (57%), Positives = 185/238 (77%), Gaps = 1/238 (0%) Query: 4 IVKIKDLHKSFGSNKVLNGVSLEVQQGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIHV 63 ++ I ++ K FG N+VL G+SL+V+ G+++AIIGKSGSGKSTLLRC+NGLE +D G+I V Sbjct: 3 LIAIDNVKKRFGDNEVLKGISLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNISV 62 Query: 64 CGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTDEAKQIAHK 123 G + +L LR LR +VG++FQ +NLFPHL+V RN+ +A +K +S EA + A Sbjct: 63 AGAKLGA-SELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGVSEAEAMKTAKA 121 Query: 124 VLQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKVM 183 L+ VGL +K +AYP+QLSGGQ QRVAIAR+L+M+P+ +L DE+TSALDPEL EVL VM Sbjct: 122 NLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTVM 181 Query: 184 EDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEMGPPDELFSNPRTAELQKFVA 241 LA+ GMT+++VTHEM FAR++ + LVFMHQG+V E+GPP+ELF NP+T ELQ+F+ Sbjct: 182 RGLAKEGMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFIG 239 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 713,401 Number of extensions: 27395 Number of successful extensions: 534 Number of sequences better than 1.0e-08: 128 Number of HSP's gapped: 292 Number of HSP's successfully gapped: 142 Length of query: 244 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 161 Effective length of database: 1,226,865 Effective search space: 197525265 Effective search space used: 197525265 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)