BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3776.p (324 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313164|ref|YP_003777256.1| LysR family transcription regul... 642 0.0 gi|300309487|ref|YP_003773579.1| LysR family transcription regul... 289 2e-79 gi|300310701|ref|YP_003774793.1| LysR family transcription regul... 277 9e-76 gi|300310375|ref|YP_003774467.1| LysR family transcription regul... 186 2e-48 gi|300313740|ref|YP_003777832.1| LysR family transcription regul... 97 1e-21 >gi|300313164|ref|YP_003777256.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/324 (96%), Positives = 318/324 (98%) Query: 1 MSNELNSSGDNRLQEEGGALPSVGSIVSRLRFRQVALLTALDEQGSLHKAAEVMHMTQPA 60 MSNELNSSGDNRL E LPSVGSIVSRLRFRQVALLTALDEQGSLHKAAEVMHMTQPA Sbjct: 1 MSNELNSSGDNRLGEGASELPSVGSIVSRLRFRQVALLTALDEQGSLHKAAEVMHMTQPA 60 Query: 61 ATKALHEMEDALGVTLFDRSPRGIEATELGRCVIRYARLIQSDVANLREELQNMISGRGG 120 ATKALHEMEDALGVTLFDRSPRGIEATELGRCVIRYARLIQSDVANLR+ELQNMISGRGG Sbjct: 61 ATKALHEMEDALGVTLFDRSPRGIEATELGRCVIRYARLIQSDVANLRDELQNMISGRGG 120 Query: 121 RLSIGTIMGAAPFVTRALSRLREIQPEVSIEISEDTSARQLLLLDQGRIDLMIGRSSVSS 180 RL+IGTIMGAAPFVTRALSRLREIQPEVSIEISEDTSARQLLLLDQGRIDLMIGRSSVSS Sbjct: 121 RLAIGTIMGAAPFVTRALSRLREIQPEVSIEISEDTSARQLLLLDQGRIDLMIGRSSVSS 180 Query: 181 QPNLYHYEMLRGEPMCIVSGIDHPLATAQKVRLQELAGASWILYSSNMPMRIWIEHEFKL 240 QPNLYHYEMLRGEPMCIVSGIDHPLATAQKVRLQELA ASWILYSSNMPMRIWIEHEFKL Sbjct: 181 QPNLYHYEMLRGEPMCIVSGIDHPLATAQKVRLQELAEASWILYSSNMPMRIWIEHEFKL 240 Query: 241 EGVKVPGNVIETASPFVTITLLAQSNMVAVMPLDIAHFFAARQMLGILPVNLKTRIEHYG 300 EGVKVPGNVIETASPFVTITLLAQSNMVAVMPLDIAHFFAA+QMLGILPVNLKTRIEHYG Sbjct: 241 EGVKVPGNVIETASPFVTITLLAQSNMVAVMPLDIAHFFAAKQMLGILPVNLKTRIEHYG 300 Query: 301 IVTRKNSTLSSLAKMFIQILRQQN 324 IVTRKN+TLSSLAKMFIQILRQQN Sbjct: 301 IVTRKNTTLSSLAKMFIQILRQQN 324 >gi|300309487|ref|YP_003773579.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 314 Score = 289 bits (740), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 152/299 (50%), Positives = 214/299 (71%), Gaps = 1/299 (0%) Query: 20 LPSVGSIVSRLRFRQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMEDALGVTLFDR 79 LPS+ SI SRL RQ+ LL AL + GSL KAAE + +TQP A+KAL E+E LGV LF R Sbjct: 5 LPSLASITSRLHLRQLRLLIALSDHGSLLKAAEQVALTQPGASKALQEIESTLGVQLFTR 64 Query: 80 SPRGIEATELGRCVIRYARLIQSDVANLREELQNMISGRGGRLSIGTIMGAAPFVTRALS 139 + RG+E TELG CVIRYARLIQ+D+ +LREE+ ++ G GGRL++GTIMGA P +T AL+ Sbjct: 65 TNRGLEPTELGHCVIRYARLIQTDLTHLREEMLAIMQGHGGRLAVGTIMGAVPLLTDALT 124 Query: 140 RLREIQPEVSIEISEDTSARQLLLLDQGRIDLMIGRSSVSSQPNLYHYEMLRGEPMCIVS 199 RL E P +S+EI EDTSAR L LLDQGR+DL I R+S+S +P+LY + E + +V+ Sbjct: 125 RLLEAHPALSVEIVEDTSARLLRLLDQGRLDLAICRTSISQRPDLYDAFNIHEEELAVVA 184 Query: 200 GIDHPLATAQKVRLQELAGASWILYSSNMPMRIWIEHEFKLEGVKVPGNVIETASPFVTI 259 + HPLA A ++L +LA + W++YS+NMPMR+ +E EF ++ P +++ET S F T+ Sbjct: 185 SVQHPLADAPSLQLADLADSRWVVYSANMPMRLTLEREFHDADLRFPLHLMETTSAFTTL 244 Query: 260 TLLAQS-NMVAVMPLDIAHFFAARQMLGILPVNLKTRIEHYGIVTRKNSTLSSLAKMFI 317 +LL ++ + VA++ +D+A F M ILP+ L TR E Y +VTR+ + LS +A++F+ Sbjct: 245 SLLQKNPHFVALLSVDVAQFCTRFGMTRILPLRLHTRSEPYQLVTRRGTMLSPVARLFL 303 >gi|300310701|ref|YP_003774793.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 321 Score = 277 bits (708), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 141/303 (46%), Positives = 200/303 (66%), Gaps = 2/303 (0%) Query: 22 SVGSIVSRLRFRQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMEDALGVTLFDRSP 81 S+ S++SRLR +Q+ LL ALDE SLHKA+ + MTQ AA+K+L E+E L LF+R+ Sbjct: 16 SLNSLLSRLRMKQLQLLIALDEHKSLHKASSALAMTQSAASKSLAELESMLDAQLFERTK 75 Query: 82 RGIEATELGRCVIRYARLIQSDVANLREELQNMISGRGGRLSIGTIMGAAP-FVTRALSR 140 G+ A G CVIRYARL+ +D+ +L EE+ + SG+GGRL+IG +MGA P + A+ Sbjct: 76 SGLIANPFGHCVIRYARLMATDLGSLCEEMAQIRSGQGGRLAIGAVMGAVPALIVPAVDA 135 Query: 141 LREIQPEVSIEISEDTSARQLLLLDQGRIDLMIGRSSVSSQPNLYHYEMLRGEPMCIVSG 200 L+ P +SIEI EDTS L LLD+G +DL++ R+SVS+ P YHY+ L EP+ +V Sbjct: 136 LQRRHPALSIEIVEDTSLHMLDLLDEGHLDLLVARASVSAHPGKYHYQSLSEEPLSVVVS 195 Query: 201 IDHPLATAQKVRLQELAGASWILYSSNMPMRIWIEHEFKLEGVKVPGNVIETASPFVTIT 260 +HP ++++L LAG WI Y S+MP+ +E E L G+ +P N I TAS FVT+ Sbjct: 196 AEHPRPRGKELQLAALAGYRWITYPSHMPLHAVLEREMDLAGLSMPANTIATASTFVTVA 255 Query: 261 LLAQ-SNMVAVMPLDIAHFFAARQMLGILPVNLKTRIEHYGIVTRKNSTLSSLAKMFIQI 319 LL Q ++MV+++P +A F R ML ILPV L++ + GIVTRK LS + F+Q+ Sbjct: 256 LLQQGADMVSILPTAVAEMFVQRGMLRILPVKLRSMSQTIGIVTRKGGQLSGAGQAFVQL 315 Query: 320 LRQ 322 LR+ Sbjct: 316 LRE 318 >gi|300310375|ref|YP_003774467.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 186 bits (472), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 98/296 (33%), Positives = 173/296 (58%), Gaps = 1/296 (0%) Query: 28 SRLRFRQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMEDALGVTLFDRSPRGIEAT 87 +RL+ RQ+ LL ALD+ ++H+AA ++MTQPAA+K L ++ED LGV LF+R PRG+ T Sbjct: 12 ARLKTRQLLLLIALDDTRNIHRAASELNMTQPAASKQLKDLEDMLGVALFERLPRGMRPT 71 Query: 88 ELGRCVIRYARLIQSDVANLREELQNMISGRGGRLSIGTIMGAA-PFVTRALSRLREIQP 146 G +IR+AR+ + ++ E++ + SG G++ +G I+ A + A++R++E P Sbjct: 72 IYGEAMIRHARMALTSLSKAHEDIVALKSGLSGQVDVGGILSPAMALLPPAIARVKEQAP 131 Query: 147 EVSIEISEDTSARQLLLLDQGRIDLMIGRSSVSSQPNLYHYEMLRGEPMCIVSGIDHPLA 206 + I + ++S L L G +D +IGR YE L EP+C V+ + HP Sbjct: 132 MLRIGVEVESSNILLSRLLHGELDFIIGRILDDEARGGLLYEELADEPICAVARVGHPFH 191 Query: 207 TAQKVRLQELAGASWILYSSNMPMRIWIEHEFKLEGVKVPGNVIETASPFVTITLLAQSN 266 + L +LA +WI+ +R + F+ +G+ P NV++T + +LL Q++ Sbjct: 192 ARTDLSLADLASEAWIMAPKGSILRARCDQMFREQGLAPPSNVVDTTAILFITSLLQQTD 251 Query: 267 MVAVMPLDIAHFFAARQMLGILPVNLKTRIEHYGIVTRKNSTLSSLAKMFIQILRQ 322 + MP ++A ++ +++ ILP+ L R+ +GI+TR+++ LS A + +Q +R+ Sbjct: 252 FIYAMPTEVARYYTQARLMDILPIELPCRMAGFGIITRQDNLLSPGANLVLQAIRE 307 >gi|300313740|ref|YP_003777832.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 97.4 bits (241), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/294 (26%), Positives = 145/294 (49%), Gaps = 10/294 (3%) Query: 32 FRQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMEDALGVTLFDRSPRGIEATELGR 91 FR + T + E+G + +AAE ++ TQPA TK + +E+ LG LF+R RGI T +G Sbjct: 3 FRDLKYFTVIAEEGHVGRAAERLYKTQPALTKCIDRLEEQLGAPLFERLGRGIRLTAVGE 62 Query: 92 CVIRYARLIQSDVANLREELQNMISGRGGRLSIGTIMGAAPFVTRALSR--LREIQPEVS 149 ++ AR I + E+ + GR G + +G + A V + + L E Q +V+ Sbjct: 63 ALLNRARQISLMMDETAREIGDYAHGREGNIRLGCVPTLAEHVLPGVCQQLLGEAQ-KVT 121 Query: 150 IEISEDTSARQLLLLDQGRIDLMIGRSSVSSQPNLYHYEMLRGEPMCIVSGIDHPLATAQ 209 I++ + L L G +D+++G + L+H E + + M +++ HP+ + Sbjct: 122 IDLKVSMNDALLAGLKAGELDIVLG--PMIQDDELFHTEEIMQDQMVVMASPQHPIFD-K 178 Query: 210 KVRLQELAGASWILYSSNMPMRIWIEHEFKLEGVKVPGNVIETASPFVTITLLAQSNMVA 269 K+RL+ L W+L + ++ R W+++ F + P I + + L+ +SN++ Sbjct: 179 KIRLRHLLDYQWVLPAQSVLSRQWLDNVFDRHHLPRPKVQITPTVLNMILPLIERSNLLG 238 Query: 270 VM-PLDIAHFFAARQMLGILPVNLKTRIEHYGIVTRKNSTLSSLAKMFIQILRQ 322 L+++ R L + + T + G+ R++ LS A+ I+IL + Sbjct: 239 FASKLNLSE---GRGHLREVVLKETTMLRRMGLTYRRDMYLSPAAQRLIRILHE 289 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 934,225 Number of extensions: 36713 Number of successful extensions: 258 Number of sequences better than 1.0e-08: 37 Number of HSP's gapped: 237 Number of HSP's successfully gapped: 37 Length of query: 324 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 239 Effective length of database: 1,217,395 Effective search space: 290957405 Effective search space used: 290957405 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)