BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3770.p
         (210 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313160|ref|YP_003777252.1| threonine efflux protein [Herba...   230   8e-62

>gi|300313160|ref|YP_003777252.1| threonine efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 207

 Score =  230 bits (586), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 140/191 (73%), Positives = 160/191 (83%), Gaps = 3/191 (1%)

Query: 1   MFSSEFLLLAGAHLLALASPGPDFLLLVRSSLRHGRGYALAASLGIALANGIYIALAIGG 60
           MFSSEFLLLA AHLLALASPGPDFLLLVR +LRHGRGY LAAS GIA ANG+YIALAI G
Sbjct: 1   MFSSEFLLLASAHLLALASPGPDFLLLVRGALRHGRGYGLAASAGIAAANGLYIALAIAG 60

Query: 61  FSVLQENPSLLLAMQWLAALYLAWLGWLFLRASGQPADLCAHLSGGQRVRVSPLGGLGAG 120
           FS+LQ +P+LL+AMQWLA+LYLAWLGW+F+RAS +PA      S G++   +   G+GAG
Sbjct: 61  FSLLQHSPALLVAMQWLASLYLAWLGWMFMRASLEPAPWPG--SAGRQAAAA-WRGVGAG 117

Query: 121 FLSAALNPKNGLFYFGLFTVIVAAHTGLQRKLFYGLWMFAAVLAWDAGLVCLIAQRRVVQ 180
           FLSA LNPKNGLFYFGLFT++V AHTGL RKLFYG+WMF AVLAWDAGLVCL+AQ RV  
Sbjct: 118 FLSALLNPKNGLFYFGLFTLMVEAHTGLPRKLFYGVWMFGAVLAWDAGLVCLMAQPRVAA 177

Query: 181 ALTRLLPLIER 191
            L R LP++ER
Sbjct: 178 LLDRALPMVER 188


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.143    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 488,587
Number of extensions: 15884
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 3
Length of query: 210
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 129
Effective length of database: 1,236,335
Effective search space: 159487215
Effective search space used: 159487215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)