BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3761.p (346 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313153|ref|YP_003777245.1| transcription regulator protein... 637 0.0 gi|300313854|ref|YP_003777946.1| LysR family transcription regul... 298 6e-82 gi|300312961|ref|YP_003777053.1| transcription regulator protein... 80 2e-16 gi|300310637|ref|YP_003774729.1| LysR family transcription regul... 79 7e-16 gi|300311571|ref|YP_003775663.1| LysR family transcription regul... 69 5e-13 >gi|300313153|ref|YP_003777245.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 331 Score = 637 bits (1644), Expect = 0.0, Method: Compositional matrix adjust. Identities = 307/343 (89%), Positives = 319/343 (93%), Gaps = 13/343 (3%) Query: 1 MESKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGSDLIDRTSYPTRLTAA 60 MESKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLG+DLIDRTSYPTRLTAA Sbjct: 1 MESKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGTDLIDRTSYPTRLTAA 60 Query: 61 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFGAI 120 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFGAI Sbjct: 61 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFGAI 120 Query: 121 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDASRYDMLTMGTETMRPYARCDRN 180 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLD+SRYDMLTMGTET+RPY+RCDRN Sbjct: 121 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDSSRYDMLTMGTETLRPYSRCDRN 180 Query: 181 GKPDYVFPGSSKAPLPFLSYTSNAYLGRMVELMMTDTKRPLHLAKHYETDMSESLKMMAL 240 GKPDYVFPGS+KAP+PFLSYTSNAYLGRMVELMM DTKRPLHL KHYETDMSESLKMMAL Sbjct: 181 GKPDYVFPGSAKAPVPFLSYTSNAYLGRMVELMMADTKRPLHLDKHYETDMSESLKMMAL 240 Query: 241 EGHGVAFLPESSVVREVRNRQLARADGPTGEWEVEMEIRLYRERPTAQRTGKALVARLWE 300 EGHGVAFLPESSVVREVRNRQLAR D P+GEWEVEMEIRLYRERPTAQR GKALVARLWE Sbjct: 241 EGHGVAFLPESSVVREVRNRQLARTDVPSGEWEVEMEIRLYRERPTAQRAGKALVARLWE 300 Query: 301 YLVELDGQRQEKGGRPERSERPRTGAASAAKSASGKSARAAEK 343 YLVELD QRQE G +A+++ GK+ RAAEK Sbjct: 301 YLVELDAQRQE-------------GGKGSARTSGGKAGRAAEK 330 >gi|300313854|ref|YP_003777946.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 310 Score = 298 bits (762), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 156/309 (50%), Positives = 204/309 (66%), Gaps = 11/309 (3%) Query: 1 MESKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGSDLIDRTSYPTRLTAA 60 ME KW+EDF+S+ ET +FSRSA+LR+VTQPAF RRI+SLE WLG++L DR+SYP LT A Sbjct: 1 MEIKWVEDFLSVVETLNFSRSAKLRNVTQPAFGRRIRSLETWLGAELFDRSSYPCTLTQA 60 Query: 61 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFGAI 120 GE F A ML Q R +LRG+ AQ+ + A+PHTL LT PK LS +E GAI Sbjct: 61 GESFVPIAKEMLNQSMQARLVLRGQLAGAQSAVRLAMPHTLLLTVFPKLLSEIEKSIGAI 120 Query: 121 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDASRYDMLTMGTETMRPYARCDRN 180 +T ++A NVHDAVM +VE CDLLLCY H +Q + LD RYD+L++G E +RPY + N Sbjct: 121 STTVMAGNVHDAVMALVERNCDLLLCYDHRQQGIALDTERYDVLSLGKEPLRPYVKTLPN 180 Query: 181 GKPDYVFPGSSKAPLPFLSYTSNAYLGRMVELMMTDTKRPLHLAKHYETDMSESLKMMAL 240 G P YV PG+ P PFLSY+ + L R+VE + + R +HL + +ETD++E LK MA+ Sbjct: 181 GLPKYVLPGAPNDPQPFLSYSPYSSLSRIVEKALHSSPRQVHLFRRFETDLAEGLKSMAV 240 Query: 241 EGHGVAFLPESSVVREVRNRQLARADGPT-------GEWEVEMEIRLYRERPTAQRTGKA 293 EGHG+A+LP S+V RE+ +L A PT G W EM+IR+YR A Sbjct: 241 EGHGIAWLPASAVAREIAEGKLTLAIAPTDSEALEQGLWCDEMDIRVYRRLDGANPD--- 297 Query: 294 LVARLWEYL 302 + R+W YL Sbjct: 298 -IDRIWNYL 305 >gi|300312961|ref|YP_003777053.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/117 (39%), Positives = 67/117 (57%), Gaps = 16/117 (13%) Query: 1 MESKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGSDLIDRTSYPTRLTAA 60 ME + L+ F ++A T SFSR+AEL H+ QP SR+I+ LE LG +LIDR S P LT A Sbjct: 1 MELRHLKYFNAVASTLSFSRAAELLHIAQPPLSRQIRQLEEMLGVELIDRASRPIALTMA 60 Query: 61 GEVFYEQAVAMLGQINN----TRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSAL 113 G+ FYEQ + +L ++ TR + RG++ H ++ ++P L L Sbjct: 61 GKFFYEQTLQVLSRLEQIEEGTRVIARGRQ------------HWFNIGFVPSALYGL 105 >gi|300310637|ref|YP_003774729.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 326 Score = 78.6 bits (192), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 77/151 (50%), Gaps = 16/151 (10%) Query: 1 MESKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGSDLIDRTSYPTRLTAA 60 M+ + L+ FV++A TR+F+R++E H+ QP SR+IQ LE LG L+ R S P RLT A Sbjct: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLLLRNSRPLRLTEA 60 Query: 61 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTY--------MPKWLSA 112 G VFYEQA+ +L +++ + A I TLS+ + +P + Sbjct: 61 GRVFYEQALQILNRLDQLK--------NATQQIGLNQRQTLSIGFVASTLYGGLPMLVRK 112 Query: 113 LESGFGAINTRLIALNVHDAVMTIVEGGCDL 143 L + ++ +L+ L + G D+ Sbjct: 113 LRQHYPEVDIQLLELTSMQQFAALKSGRIDV 143 >gi|300311571|ref|YP_003775663.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 68.9 bits (167), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 67/124 (54%) Query: 1 MESKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGSDLIDRTSYPTRLTAA 60 ME + L FV++ + S SR+A H+ QPA +++I+ LE L + L+ R++ T A Sbjct: 1 MELRQLRYFVAIVDHGSLSRAARALHIAQPALTQQIRQLEDELAAQLLHRSAQGVIATDA 60 Query: 61 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFGAI 120 G+VFYE A+A+L Q+ + + + T+ +P ++S L+A+ S + I Sbjct: 61 GKVFYEHALAILKQVQDAKQAVGQSADKPSGTVALGIPQSVSNALALPLLNAVRSTYPEI 120 Query: 121 NTRL 124 +L Sbjct: 121 TLQL 124 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.131 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,033,896 Number of extensions: 41273 Number of successful extensions: 209 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 212 Number of HSP's successfully gapped: 13 Length of query: 346 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 260 Effective length of database: 1,212,660 Effective search space: 315291600 Effective search space used: 315291600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)