BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3758.p (249 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313150|ref|YP_003777242.1| glutamate/aspartate ABC transpo... 487 e-139 gi|300312813|ref|YP_003776905.1| glutamate/aspartate ABC transpo... 230 7e-62 gi|300313536|ref|YP_003777628.1| amino acid ABC transporter perm... 96 2e-21 gi|300313611|ref|YP_003777703.1| amino acid ABC transporter perm... 91 9e-20 gi|300311602|ref|YP_003775694.1| glutamine ABC transporter perme... 86 2e-18 >gi|300313150|ref|YP_003777242.1| glutamate/aspartate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 249 Score = 487 bits (1253), Expect = e-139, Method: Compositional matrix adjust. Identities = 242/249 (97%), Positives = 246/249 (98%) Query: 1 MHYNWNWGIFWEMSPDGIPYIDTLLAGLKWTLATAACAWIMALILGTIFGTLRTTTKPWV 60 MHYNWNWGIFWEMSPDGIPYIDTLLAGLKWTLATAACAWIMALILGTIFGTLRTTTKPWV Sbjct: 1 MHYNWNWGIFWEMSPDGIPYIDTLLAGLKWTLATAACAWIMALILGTIFGTLRTTTKPWV 60 Query: 61 VRISNGYVELFRNIPLLVQMFLWYFVMPELLPTAMGDWIKGLPNASFVTATLALGFFTSS 120 VRI+NGYVELFRNIPLLVQMFLWYFVMPELLP +GDWIK LP+ASFVTATLALGFFTSS Sbjct: 61 VRIANGYVELFRNIPLLVQMFLWYFVMPELLPAFIGDWIKSLPDASFVTATLALGFFTSS 120 Query: 121 RVAVQVTTGIQALPRGQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSS 180 RVAVQVTTGIQALPRGQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSS Sbjct: 121 RVAVQVTTGIQALPRGQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSS 180 Query: 181 VALTIGLVELTAATYSMREFTFQTFEALTGATVIYVIISVIALFMARLLEKVTAVPGYIT 240 VALTIGLVELTAATYSMREFTFQTFEALTGAT+IYVIISVIALFMARLLEKVTAVPGYIT Sbjct: 181 VALTIGLVELTAATYSMREFTFQTFEALTGATIIYVIISVIALFMARLLEKVTAVPGYIT 240 Query: 241 GGSTSAGGH 249 GGSTSAGGH Sbjct: 241 GGSTSAGGH 249 >gi|300312813|ref|YP_003776905.1| glutamate/aspartate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 241 Score = 230 bits (587), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 121/239 (50%), Positives = 161/239 (67%), Gaps = 4/239 (1%) Query: 1 MHYNWNWGIFWEMSPDGIPYIDTLLAGLKWTLATAACAWIMALILGTIFGTLRTTTKPWV 60 M Y W W +F + G Y+D LL+GL T+A AWI+AL+LGT G LRT + Sbjct: 1 MAYQWQWSVFLQAPSTGQTYLDWLLSGLGVTVALGLSAWILALVLGTFLGILRTLPNRAL 60 Query: 61 VRISNGYVELFRNIPLLVQMFLWYFVMPELLPTAMGDWIKGLP--NASFVTATLALGFFT 118 + YVELFRN+PLLVQ+F+WYF MPELLP GD +K LP FV A L LG FT Sbjct: 61 SGFAACYVELFRNVPLLVQIFIWYFAMPELLP--WGDAVKALPPMTQQFVMAMLCLGMFT 118 Query: 119 SSRVAVQVTTGIQALPRGQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKN 178 ++RV QV +GI++LPRGQ+ AG ALGLT QTY +VLLPMA RI++P LT+EF I KN Sbjct: 119 AARVCEQVRSGIESLPRGQKGAGLALGLTLGQTYLFVLLPMAMRIVLPPLTSEFLNIFKN 178 Query: 179 SSVALTIGLVELTAATYSMREFTFQTFEALTGATVIYVIISVIALFMARLLEKVTAVPG 237 S+VA TIGL+EL A + ++T Q +EA T+ Y++I++ + + R+LE+ T++PG Sbjct: 179 SAVASTIGLLELAAQGRQLVDYTAQPYEAFIAVTLAYMLINICVMSLMRILERKTSLPG 237 >gi|300313536|ref|YP_003777628.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 223 Score = 96.3 bits (238), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 115/211 (54%), Gaps = 12/211 (5%) Query: 20 YIDTLLAGLKWTLATAACAWIMALILGTIFGTLRTTTKP-WVVRISNGYVELFRNIPLLV 78 Y D ++ G+ T+ A ++ + +G IFG T P W+ + +GYVE+ RN P LV Sbjct: 13 YTDVIVKGVATTIELIAIGGVLGVAVG-IFGAWARTQGPGWLKPVVSGYVEIIRNTPFLV 71 Query: 79 QMFLWYFVMPELLPTAMGDWIKGLPNASFVTATLALGFFTSSRVAVQVTTGIQALPRGQR 138 Q+F +F +P L D A+ V + LG +++ + G+QA+PRGQ Sbjct: 72 QLFFIFFGLPSL------DIHISEITAAIVAMVINLGAYSTE----IIRAGVQAIPRGQI 121 Query: 139 MAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSSVALTIGLVELTAATYSMR 198 A +L ++ +Q +R+++L A + I PAL+++ ++ S+V I + EL+ A ++ Sbjct: 122 EAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFIQ 181 Query: 199 EFTFQTFEALTGATVIYVIISVIALFMARLL 229 F+ FEA AT IY++++++ + RL+ Sbjct: 182 GRNFRAFEAYIVATAIYLVLAILLRQVLRLI 212 >gi|300313611|ref|YP_003777703.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 247 Score = 90.9 bits (224), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 117/226 (51%), Gaps = 18/226 (7%) Query: 27 GLKWTLATAACAWIMALILGTIFGTLR---TTTKPW-----VVR-ISNGYVELFRNIPLL 77 G+ TL + + ++ ++G + G LR PW +R ++ YV FR PL Sbjct: 18 GVLMTLQVSLISILIGTVIGLLVGMLRLAEVQHGPWKWPLKSMRWLAGFYVAFFRGTPLF 77 Query: 78 VQMFLWYF-VMPELLPTAMGDWIKG-------LPNASFVTATLALGFFTSSRVAVQVTTG 129 VQ+ L +F VMP L+ G I G +F++ T+AL + ++ G Sbjct: 78 VQIMLIHFAVMPVLVQQEHGLLITGELARTIKQDYGAFLSGTVALSLNAGAYISEIFRAG 137 Query: 130 IQALPRGQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSSVALTIGLVE 189 IQ++ RGQ A A+LG+ T RYV+LP AFR ++P L NE ++K+SS+ IGL E Sbjct: 138 IQSIERGQSYAAASLGMNYGLTMRYVVLPQAFRRMLPPLGNEAITLLKDSSLVSAIGLAE 197 Query: 190 LTAATYSMREFTFQTFEALTGATVIYVIISV-IALFMARLLEKVTA 234 L A ++ + +E +V+Y +++ +AL +ARL K +A Sbjct: 198 LAYAARTVAGTYARYWEPYITISVLYFSMTICLALVVARLESKYSA 243 >gi|300311602|ref|YP_003775694.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 86.3 bits (212), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 92/173 (53%), Gaps = 10/173 (5%) Query: 67 YVELFRNIPLLVQMFLWYFVMPELLPTAMGDWIKGLPNASFVTATLALGFFTSSRVAVQV 126 Y+ L R PLLVQ+FLW+F +P + G+ ++V L LG ++ + V+ V Sbjct: 59 YLTLVRGTPLLVQLFLWFFGLPHV----------GVILPAYVCGILGLGIYSGAYVSEIV 108 Query: 127 TTGIQALPRGQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSSVALTIG 186 IQ++ RGQ A +LGL R V+LP AF +IP L NEF A+IKNS++ + Sbjct: 109 RGAIQSIERGQMEAARSLGLPYRMAMRRVILPQAFVRMIPPLGNEFIALIKNSALVSLLT 168 Query: 187 LVELTAATYSMREFTFQTFEALTGATVIYVIISVIALFMARLLEKVTAVPGYI 239 + +L + T+++ E +IY++++ + + R +EKV G + Sbjct: 169 IADLMHEGEKIISVTYRSLETYLAIALIYLLLTSVTTLILRRVEKVLRSEGRV 221 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.138 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 779,764 Number of extensions: 30499 Number of successful extensions: 184 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 166 Number of HSP's successfully gapped: 19 Length of query: 249 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 166 Effective length of database: 1,226,865 Effective search space: 203659590 Effective search space used: 203659590 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)