BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3750.p
         (345 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313142|ref|YP_003777234.1| N-acetyl-gamma-glutamyl-phospha...   690   0.0  
gi|300312103|ref|YP_003776195.1| N-acetyl-gamma-glutamyl-phospha...    69   4e-13

>gi|300313142|ref|YP_003777234.1| N-acetyl-gamma-glutamyl-phosphate
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/345 (96%), Positives = 343/345 (99%)

Query: 1   MIKVGIVGGTGYTGVELLRIFATHPQARVQAVTSRKEDGMPVAEMYPSLRGRVDVAFSSP 60
           MIKVGIVGGTGYTGVELLRIFATHP+ARVQAVTSRKEDGMPVAEMYPSLRGRVDVAFSSP
Sbjct: 1   MIKVGIVGGTGYTGVELLRIFATHPEARVQAVTSRKEDGMPVAEMYPSLRGRVDVAFSSP 60

Query: 61  DKAQLNDCDVVFFATPHGVAMAQAPELVAAGVKVIDLAADFRMQDVAAFEKWYKLPHSCT 120
           DKA+L DCDVVFFATPHGVAMAQAPELVAAGVKVIDLAADFRMQDVAAFEKWYKLPHSCT
Sbjct: 61  DKARLTDCDVVFFATPHGVAMAQAPELVAAGVKVIDLAADFRMQDVAAFEKWYKLPHSCT 120

Query: 121 ELLKEAAYGLPELNREAIRKARVVGNPGCYPTTMQLGFAPLLKAGVIDASHLIADCKSGV 180
           +LLKEAAYGLPELNREAIRKARVVGNPGCYPTTMQLG+APLLKAGVIDASHLIADCKSGV
Sbjct: 121 DLLKEAAYGLPELNREAIRKARVVGNPGCYPTTMQLGYAPLLKAGVIDASHLIADCKSGV 180

Query: 181 SGAGRKAELSLLFSEASDNFKAYGVSGHRHSPETIERLSHLTSDKVGLLFTPHLVPMIRG 240
           SGAGRKAELSLLFSEASDNFKAYGVSGHRHSPETIERLSHLTSDKVGLLFTPHLVPMIRG
Sbjct: 181 SGAGRKAELSLLFSEASDNFKAYGVSGHRHSPETIERLSHLTSDKVGLLFTPHLVPMIRG 240

Query: 241 MHSTLYARLTRDIDNAALQALFEEAYKDEPFVDVLPFGSHPETRTTRASNMLRLAVHRPD 300
           MHSTLYARLT++IDNAALQALFE+AYKDEPFVDVLPFG+HPETRTTRASNMLRLAVHRP 
Sbjct: 241 MHSTLYARLTKEIDNAALQALFEDAYKDEPFVDVLPFGAHPETRTTRASNMLRLAVHRPG 300

Query: 301 NGDTVVVLVVQDNLVKGASGQAVQCMNLMFGLEETSGLQQVPVLP 345
           +GDTVVVLVVQDNLVKGASGQAVQCMNLMFGL+ET+GLQQVPVLP
Sbjct: 301 DGDTVVVLVVQDNLVKGASGQAVQCMNLMFGLDETTGLQQVPVLP 345


>gi|300312103|ref|YP_003776195.1| N-acetyl-gamma-glutamyl-phosphate
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 309

 Score = 69.3 bits (168), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 116/282 (41%), Gaps = 40/282 (14%)

Query: 65  LNDCDVVFFATPHGVAMAQAPELVAAGVKVIDLAADFRMQDVAAFEKWYKLPHSCTELLK 124
           +N  D+     P   A      +    V+VID ++  R         W            
Sbjct: 50  INSADIALLCLPDAAAREAVAMISNPRVRVIDASSAHRTS-----PDW------------ 92

Query: 125 EAAYGLPEL---NREAIRKARVVGNPGCYPTTMQLGFAPLLKAGVIDASH-LIADCKSGV 180
              YG PE+     EAI  A  V NPGCYPT       PL++AG++ A + L     SG 
Sbjct: 93  --VYGFPEMAAGQAEAIATALRVSNPGCYPTGAIALLRPLVQAGLVPADYPLNIHAVSGY 150

Query: 181 SGAGRKAELSLLFSEASDN--FKAYGVS-GHRHSPETIERLSHLTSDKVGLLFTPHLVPM 237
           SG GR        +EA+    F  YG+   H+H PE   +L    S +   LF P     
Sbjct: 151 SGGGRAQVEQYEGAEAAHAAPFVTYGLGLQHKHPPEM--QLHAGLSQRP--LFVPSYGAF 206

Query: 238 IRGMHSTLYARLTRDIDNAA----LQALFEEAYKDEPFVDVLPFGSHPETRT---TR--A 288
            +G+  T+ A  +R +   A    L+A  +  Y    +V VL       T     TR   
Sbjct: 207 RQGIVLTI-ALQSRLLPAQASLERLRATLQAHYDGAHYVTVLDAAQSESTTQLDPTRHNH 265

Query: 289 SNMLRLAVHRPDNGDTVVVLVVQDNLVKGASGQAVQCMNLMF 330
           SN + L V        +++  V DNL KGASG AVQ ++LM 
Sbjct: 266 SNQMSLGVFGHAGHGHILLCAVFDNLGKGASGAAVQNLDLML 307


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,034,525
Number of extensions: 42968
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 259
Effective length of database: 1,212,660
Effective search space: 314078940
Effective search space used: 314078940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)