BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3749.p
         (237 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313141|ref|YP_003777233.1| hypothetical protein Hsero_3847...   401   e-113

>gi|300313141|ref|YP_003777233.1| hypothetical protein Hsero_3847
           [Herbaspirillum seropedicae SmR1]
          Length = 236

 Score =  401 bits (1030), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/237 (89%), Positives = 221/237 (93%), Gaps = 1/237 (0%)

Query: 1   MSISAPKMTIKRHLPLPLLILLWAAVVAVGAAAAVWTYQLGRNNLPGLHGDAGDASEQIE 60
           M+ISAPKMTIKRHLP PL+ LLWA VVAVGAAAAVWTYQLGRN+LPGL    GDASEQ+E
Sbjct: 1   MTISAPKMTIKRHLPWPLMALLWAVVVAVGAAAAVWTYQLGRNHLPGLQLQ-GDASEQVE 59

Query: 61  QLSEQVKKLTAENERLQSASNASQNELKIAQTAQATLAGQVKNLEAENNRQKEDLAFFDS 120
           QLSEQVKKL+AENERLQSASNASQNELKIAQ+AQA LA QVKNLEAE NRQKEDLAFFDS
Sbjct: 60  QLSEQVKKLSAENERLQSASNASQNELKIAQSAQAQLATQVKNLEAEINRQKEDLAFFDS 119

Query: 121 LLPTNLGAPGITIQRFKAEQAAPNQLRYRVLVMQGGGGTQQFAGNLQLSVNIVQGGKGVT 180
           LLPTNLGAPGITIQRFKAEQAAPNQLRYRVLVMQGGGGTQQFAGNLQLSVNIVQGGK   
Sbjct: 120 LLPTNLGAPGITIQRFKAEQAAPNQLRYRVLVMQGGGGTQQFAGNLQLSVNIVQGGKSAI 179

Query: 181 INFPESNAADQARYRLAFKYYQRVEGLLTIPEGATVKSVAVRVLDRGQVRAQQSLDL 237
           INFPESN+ D ARYRLAFKYYQRVEGLL IPEGA++KSVAVRVLDRGQVRAQQS+DL
Sbjct: 180 INFPESNSTDLARYRLAFKYYQRVEGLLNIPEGASIKSVAVRVLDRGQVRAQQSVDL 236


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.130    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 609,672
Number of extensions: 23132
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 155
Effective length of database: 1,231,600
Effective search space: 190898000
Effective search space used: 190898000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)