BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3747.p
         (121 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313139|ref|YP_003777231.1| hypothetical protein Hsero_3845...   249   5e-68
gi|300312139|ref|YP_003776231.1| hypothetical protein Hsero_2831...   166   7e-43
gi|300312140|ref|YP_003776232.1| transcription regulator protein...    71   3e-14
gi|300312442|ref|YP_003776534.1| hypothetical protein Hsero_3142...    69   1e-13

>gi|300313139|ref|YP_003777231.1| hypothetical protein Hsero_3845
           [Herbaspirillum seropedicae SmR1]
          Length = 121

 Score =  249 bits (636), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   MNAVAELQQTDMPAPINFSDSAAAKVAQLIEEEGNPDLKLRVFVQGGGCSGFQYGFTFDE 60
           MNAVAELQQTDMPAPINFSDSAAAKVAQLIEEEGNPDLKLRVFVQGGGCSGFQYGFTFDE
Sbjct: 1   MNAVAELQQTDMPAPINFSDSAAAKVAQLIEEEGNPDLKLRVFVQGGGCSGFQYGFTFDE 60

Query: 61  IVNEDDTTMSKNGVQLLIDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTTCGCGSSFS 120
           IVNEDDTTMSKNGVQLLIDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTTCGCGSSFS
Sbjct: 61  IVNEDDTTMSKNGVQLLIDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTTCGCGSSFS 120

Query: 121 V 121
           V
Sbjct: 121 V 121


>gi|300312139|ref|YP_003776231.1| hypothetical protein Hsero_2831
           [Herbaspirillum seropedicae SmR1]
          Length = 118

 Score =  166 bits (419), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 75/108 (69%), Positives = 93/108 (86%)

Query: 14  APINFSDSAAAKVAQLIEEEGNPDLKLRVFVQGGGCSGFQYGFTFDEIVNEDDTTMSKNG 73
           AP+ F+DSA AKV++LI EEGN +LKLR++V GGGCSGF+YGF FD+ VNEDD  + +NG
Sbjct: 11  APLIFTDSAVAKVSELISEEGNTELKLRIYVSGGGCSGFEYGFAFDDAVNEDDFCIERNG 70

Query: 74  VQLLIDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTTCGCGSSFSV 121
           V LL+D+MS QYL GAEI Y++ LEG++F+IKNPNATTTCGCGSSFSV
Sbjct: 71  VSLLVDAMSMQYLNGAEIGYEEGLEGSRFIIKNPNATTTCGCGSSFSV 118


>gi|300312140|ref|YP_003776232.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 106

 Score = 70.9 bits (172), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 2/106 (1%)

Query: 16  INFSDSAAAKVAQLIEEEGNPDLKLRVFVQGGGCSGFQYGFTFDEIVNEDDTTMSKNGVQ 75
           I  +++AA +V   + +     + LR+ V+  GCSG  Y   + ++    D     +GV 
Sbjct: 3   ITLTENAARRVHAFLAKRS--AVGLRLAVKTSGCSGMAYALEYADVAEPQDVRFESHGVT 60

Query: 76  LLIDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTTCGCGSSFSV 121
           +LID  S  YL G E+D+  +     F   NPNA   CGCG SF+V
Sbjct: 61  VLIDPKSLPYLDGTELDFVREGLNEGFKFNNPNAKNQCGCGESFAV 106


>gi|300312442|ref|YP_003776534.1| hypothetical protein Hsero_3142
           [Herbaspirillum seropedicae SmR1]
          Length = 107

 Score = 68.9 bits (167), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 1/106 (0%)

Query: 16  INFSDSAAAKVAQLIEEEGNPDLKLRVFVQGGGCSGFQYGFTFDEIVNEDDTTMSKNGVQ 75
           I  ++ AA  +++ +E  G   + LR+ V+  GCSG  Y   + +  + +DT    +GV+
Sbjct: 3   ITLTEKAAKHISRYMERRGK-GIGLRLGVRTTGCSGLAYKLEYVDEQSSEDTVFESHGVR 61

Query: 76  LLIDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTTCGCGSSFSV 121
           + +D  S  Y+ G E+D+  +     F  +NPN    CGCG SF +
Sbjct: 62  VFVDPKSLPYIDGTELDFAREGLNEGFKFQNPNVKDECGCGESFRI 107


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 358,566
Number of extensions: 13347
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 4
Length of query: 121
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 47
Effective length of database: 1,269,480
Effective search space: 59665560
Effective search space used: 59665560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 125 (52.8 bits)