BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3742.p (725 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313134|ref|YP_003777226.1| twitching motility transmembran... 1131 0.0 gi|300310620|ref|YP_003774712.1| methyl-accepting chemotaxis tra... 125 2e-29 gi|300313877|ref|YP_003777969.1| methyl-accepting chemotaxis sen... 112 1e-25 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 111 2e-25 gi|300312424|ref|YP_003776516.1| methyl-accepting chemotaxis sen... 108 1e-24 >gi|300313134|ref|YP_003777226.1| twitching motility transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 753 Score = 1131 bits (2925), Expect = 0.0, Method: Compositional matrix adjust. Identities = 595/697 (85%), Positives = 647/697 (92%) Query: 29 LRLPYLCRFSLRTQTRLLLGVLAVSLTALCLFMWLGARLYLLATLQTNLASDLVMHSQRI 88 +RLPYL RF+LRTQTR+LLG+LA+SL L LF+WLG+RLY+ ATLQT++ASDLVMHSQR+ Sbjct: 57 MRLPYLHRFALRTQTRILLGILALSLAGLFLFLWLGSRLYIHATLQTHIASDLVMHSQRL 116 Query: 89 GKAVPNAIQGNPQAFVQLAQSRNEFNRGLLLLSSGGLYQGQNIGPPDAAIKPVLENVEHI 148 GKAVPNAIQGNP+AFVQLAQSR EFNRGLLLL+SGG YQG IG P+ A+KP LE++ + Sbjct: 117 GKAVPNAIQGNPEAFVQLAQSRVEFNRGLLLLTSGGTYQGNTIGLPEPAMKPALESITRL 176 Query: 149 WRRTDLAGETILGMEKELTGFGTTLKRLNQLLPVMLDLSEQIAMLQSQGHPTTREMAAAS 208 WRR+DLA E IL ++KELTGFG TLKRLNQLLPVMLDLSEQI+MLQSQ PT REM AAS Sbjct: 177 WRRSDLAAENILALQKELTGFGATLKRLNQLLPVMLDLSEQISMLQSQSRPTPREMNAAS 236 Query: 209 QLVMLTLRLGRSSNEFLTSEGVNPETAFMLGKDITAFGDLLKSLQEGNDMLRLRPASDPD 268 QLVMLTLRLGRS+NEFLTSEGVNPETAFMLGKDITAFGD L SL++GN+MLRLRPASDPD Sbjct: 237 QLVMLTLRLGRSANEFLTSEGVNPETAFMLGKDITAFGDQLTSLRDGNEMLRLRPASDPD 296 Query: 269 LRDKLQELSRVFGEYQPQIAGILGNLQNFIAAKRAEQLVFVENETLKRHLTELQDAYRVA 328 LR+KL EL RVF +YQPQIAGILG+LQNFIAAK+AE+LVFVENETLKR LTELQD YR+A Sbjct: 297 LREKLDELERVFAQYQPQIAGILGHLQNFIAAKQAERLVFVENETLKRQLTELQDDYRIA 356 Query: 329 LKARSWTFWAVLAAMAMALLSAIGIALAQLQSSRNNAAAAEARRQEAEQQRQLAQQEEEK 388 LK+RSWTFWA+L M MALLSAIGIAL QLQSSRNNAAAAEARRQ+AE QRQLAQQEEEK Sbjct: 357 LKSRSWTFWAMLVTMVMALLSAIGIALVQLQSSRNNAAAAEARRQQAELQRQLAQQEEEK 416 Query: 389 AMRANHQTQAAILRLMTELQKVADGDLTVHTTVSDDVTGAIADSVNYTVEALRGLVEQVT 448 AMR NH TQ AILRLMTELQKVADGDLTV TTVSDDVTGAIADSVN+TVEALR LVEQVT Sbjct: 417 AMRVNHLTQTAILRLMTELQKVADGDLTVRTTVSDDVTGAIADSVNHTVEALRALVEQVT 476 Query: 449 QMAAKVALSSQQVRGTTTELGAAARAQAHRIQRIAQAMLEMSTQINGISVSADESADVAR 508 QMA+KV+ SS+QVRGTTTELGAAARAQA RIQRIAQAMLEMS QI GISVSADESADVAR Sbjct: 477 QMASKVSQSSEQVRGTTTELGAAARAQARRIQRIAQAMLEMSMQITGISVSADESADVAR 536 Query: 509 HAVVVAERGTRAVEDAVKAMDGIGEQIRETSGRITRLGASSQMIGEITELISDITERTNV 568 HAV+ AERG RAVE+A+KAM+GI EQI+ETSGRITRLG SSQMIGEITELISDITERTNV Sbjct: 537 HAVLAAERGERAVENAIKAMNGIREQIQETSGRITRLGESSQMIGEITELISDITERTNV 596 Query: 569 LALNAAIQAASAGEAGRGFSVVAEEVQHLAERSSAATREIGALVRMIQADTRDVVVAMEK 628 LALNAAIQAASAGEAGRGFSVVAEEVQHLAERSSAATREIGALVRMIQADTRDVVVAM+K Sbjct: 597 LALNAAIQAASAGEAGRGFSVVAEEVQHLAERSSAATREIGALVRMIQADTRDVVVAMDK 656 Query: 629 STTGVTDGAVLSDAAGSALADIRSVSKQLAELIQGMAAATREQAVSASGVAQQIQGILSE 688 STTGVT+GAVLSDAAGSALADIRSVS++LAELIQGMA +TREQAVSA+GVAQQIQGIL+E Sbjct: 657 STTGVTEGAVLSDAAGSALADIRSVSEKLAELIQGMAGSTREQAVSANGVAQQIQGILTE 716 Query: 689 NDIIEQSREQVSTLYEELWDAARQLESSVSRFRVTVS 725 NDIIEQSREQVS LYEELW AARQLE+SVSRFRVTVS Sbjct: 717 NDIIEQSREQVSALYEELWAAARQLENSVSRFRVTVS 753 >gi|300310620|ref|YP_003774712.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 573 Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 96/302 (31%), Positives = 161/302 (53%), Gaps = 35/302 (11%) Query: 413 GDLTVHTTVSDDVTGAIADSVNYTVEALRGLVEQVTQMAAKVALSSQQVRGTTTELGAAA 472 GDL+ H +S G++ +++ +LR +V+ V + +A S+Q+ +L A Sbjct: 239 GDLSTHIDISHAAQGSVVSAMHMMQGSLRKVVQTVRTSSESIATGSRQIATGNLDLSART 298 Query: 473 RAQAHRIQRIAQAMLEMSTQINGISVSADESADVARHAVVVAERGTRAVEDAVKAMDGIG 532 QA ++ A +M E+++ + + +A + ++A A VA+ G V V M I Sbjct: 299 EQQASALEETASSMEELTSTVKHNASNAQNAKEMAATASTVAQEGGEVVAQVVDTMSAIN 358 Query: 533 EQIRETSGRITRLGASSQMIGEITELISDITERTNVLALNAAIQAASAGEAGRGFSVVAE 592 E SS+ + +I +I I +TN+LALNAA++AA AGE GRGF+VVA Sbjct: 359 E--------------SSRKMADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAT 404 Query: 593 EVQHLAERSSAATREIGALVRMIQADTRDVVVAMEKSTTGVTDGAVLSDAAGSALADIRS 652 EV++LA+RS+AA +EI AL+ E S VT GA L+D AG+ ++ I Sbjct: 405 EVRNLAQRSAAAAKEIKALI--------------EDSVDKVTVGARLADQAGTTMSGIVE 450 Query: 653 VSKQLAELIQGMAAATREQAVSASGVAQQIQGILSENDIIEQSREQVSTLYEELWDAARQ 712 + ++ +I ++AA+ EQ +G+ Q Q I+ +D+ +Q+ ++L EE A+R Sbjct: 451 NAGKVTSIIGEISAASTEQ---TAGIEQINQAIMQMDDVTQQN----ASLVEEAAAASRA 503 Query: 713 LE 714 L+ Sbjct: 504 LQ 505 >gi|300313877|ref|YP_003777969.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 539 Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 104/319 (32%), Positives = 168/319 (52%), Gaps = 35/319 (10%) Query: 408 QKVADGDLTVHTTV-SDDVTGAIADSVNYTVEALRGLVEQVTQMAAKVALSSQQVRGTTT 466 ++VAD DLT V S D TG + ++N+ ++L +V +V + + + +S ++ Sbjct: 245 RQVADNDLTGQVRVHSADETGQLMQALNHMTQSLGNMVAEVHRSISVIDTASGEIASGNA 304 Query: 467 ELGAAARAQAHRIQRIAQAMLEMSTQINGISVSADESADVARHAVVVAERGTRAVEDAVK 526 +L A +QA ++ A AM E+++ + + A ++ ++ + +A +G V+ V+ Sbjct: 305 DLSARTESQASSLEETASAMEELTSTVRQNADHAHQANELVATSSRLAVQGGAVVDQVVQ 364 Query: 527 AMDGIGEQIRETSGRITRLGASSQMIGEITELISDITERTNVLALNAAIQAASAGEAGRG 586 M GE IR S RI +IT +I I +TN+LALNAA++AA AGE GRG Sbjct: 365 TM---GE-IRTGSARI----------ADITGVIDGIAFQTNILALNAAVEAARAGEQGRG 410 Query: 587 FSVVAEEVQHLAERSSAATREIGALVRMIQADTRDVVVAMEKSTTGVTDGAVLSDAAGSA 646 F+VVA EV+ LA+RS+AA REI AL+ E S V GA L D AG Sbjct: 411 FAVVATEVRSLAQRSAAAAREIKALI--------------EGSVQQVATGAELVDQAGQT 456 Query: 647 LADIRSVSKQLAELIQGMAAATREQAVSASGVAQQIQGILSENDIIEQS---REQVSTLY 703 + +I ++A L+ +A A+REQ + G+ + + ++ +Q+ EQ + Sbjct: 457 MHEIVDSVARVATLMSEIAVASREQ---SRGIDEINHAVTQMDEGTQQNAALVEQAAAAA 513 Query: 704 EELWDAARQLESSVSRFRV 722 L D RQL + V+RFR+ Sbjct: 514 HSLRDQTRQLAALVARFRL 532 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/266 (31%), Positives = 144/266 (54%), Gaps = 29/266 (10%) Query: 408 QKVADGDLTVHT-TVSDDVTGAIADSVNYTVEALRGLVEQVTQMAAKVALSSQQVRGTTT 466 Q+VA GDLT+ D TGA+ +++ E+LR +V +V Q + +S ++ Sbjct: 227 QRVARGDLTLRIRPAGRDETGALMEALRAMNESLRDIVSEVRQGTDTITTASHEIARGNL 286 Query: 467 ELGAAARAQAHRIQRIAQAMLEMSTQINGISVSADESADVARHAVVVAERGTRAVEDAVK 526 +L QA ++ A AM E+++ + + +A ++ +A A +A +G V V+ Sbjct: 287 DLSNRTEQQAGSLEETASAMEELTSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQ 346 Query: 527 AMDGIGEQIRETSGRITRLGASSQMIGEITELISDITERTNVLALNAAIQAASAGEAGRG 586 M+GI E SS+ I +I +I I +TN+LALNAA++AA AGE GRG Sbjct: 347 TMEGITE--------------SSRRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRG 392 Query: 587 FSVVAEEVQHLAERSSAATREIGALVRMIQADTRDVVVAMEKSTTGVTDGAVLSDAAGSA 646 F+VVA EV+ LA+RS+ A +EI L+ + S V+ G+ L + AGS Sbjct: 393 FAVVASEVRSLAQRSAGAAKEIKELI--------------DDSVQKVSAGSALVERAGST 438 Query: 647 LADIRSVSKQLAELIQGMAAATREQA 672 + ++ + +++ +++ ++AAT+EQ+ Sbjct: 439 MTEVVASVRRVTDVVAEISAATQEQS 464 >gi|300312424|ref|YP_003776516.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 531 Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 86/287 (29%), Positives = 152/287 (52%), Gaps = 31/287 (10%) Query: 409 KVADGDLTVHTTVSDDVTGAIADSVNYTVEALRGLVEQVTQMAAKVALSSQQVRGTTTEL 468 ++A G+L + + G++ S+ + L GLV Q+ + + +++Q++ +L Sbjct: 219 QIAAGNLAARLELKSNDNGSLMRSLMIMRDQLSGLVGQIQHASTSIHVAAQEIAQGNIDL 278 Query: 469 GAAARAQAHRIQRIAQAMLEMSTQINGISVSADESADVARHAVVVAERGTRAVEDAVKAM 528 QA ++ A +M E+++ + + +A +++ +A VA RG + D V M Sbjct: 279 SQRTEEQAASLEETASSMEELTSTVQQNAGNAKQASSMASAGAEVARRGEAEIADVVATM 338 Query: 529 DGIGEQIRETSGRITRLGASSQMIGEITELISDITERTNVLALNAAIQAASAGEAGRGFS 588 RE S SS + +I +I I+ +TN+LALNAA++AA AGE GRGF+ Sbjct: 339 -------REMS-------VSSHQMSDIISVIEGISFQTNILALNAAVEAARAGENGRGFA 384 Query: 589 VVAEEVQHLAERSSAATREIGALVRMIQADTRDVVVAMEKSTTGVTDGAVLSDAAGSALA 648 VVA EV+ LA+RSSAA +EI L+ E S + +G+ L +AAG+ +A Sbjct: 385 VVASEVRALAQRSSAAAKEIKDLI--------------EDSVGRIRNGSQLVEAAGATIA 430 Query: 649 DIRSVSKQLAELIQGMAAATREQAVSASGVAQQIQGILSENDIIEQS 695 +I S + +L++ +AAA+ EQ ++G+ Q I+ + + +Q+ Sbjct: 431 EIMQSSVRTTDLMKEIAAASEEQ---SAGIGQVNTAIVQMDQVTQQN 474 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.127 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,642,658 Number of extensions: 58639 Number of successful extensions: 537 Number of sequences better than 1.0e-08: 69 Number of HSP's gapped: 406 Number of HSP's successfully gapped: 70 Length of query: 725 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 633 Effective length of database: 1,184,250 Effective search space: 749630250 Effective search space used: 749630250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)