BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3741.p (739 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313133|ref|YP_003777225.1| CheA-like histidine kinase [Her... 710 0.0 gi|300312286|ref|YP_003776378.1| signal-transducing histidine ki... 222 1e-58 gi|300309957|ref|YP_003774049.1| chemotaxis histidine kinase [He... 189 7e-49 gi|300311033|ref|YP_003775125.1| chemotaxis histidine kinase [He... 181 2e-46 gi|300312322|ref|YP_003776414.1| two component hybrid sensor his... 164 3e-41 >gi|300313133|ref|YP_003777225.1| CheA-like histidine kinase [Herbaspirillum seropedicae SmR1] Length = 744 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/740 (57%), Positives = 517/740 (69%), Gaps = 46/740 (6%) Query: 29 ADTVLRETLRPLLAIVRQQSAAWGARQESEDGPRAAVPPLALRSLAALRDYARSSSAEPF 88 A+ L+ETL+PLL I+RQQ ++W AR +S G PPL LR+L A+RD RS+ A Sbjct: 19 ANDALQETLQPLLKILRQQGSSWRARVDS--GLVCPAPPLYLRTLTAVRDCTRSAGAADL 76 Query: 89 ADAAARLFALLE--QQSAQA----DLDPLTRSII--------QADIEQLAQLLEAPLTAT 134 A+ + +LE Q Q LD + R++ + +E+LA L + P + Sbjct: 77 EACASAILRVLECAQPPGQGLDIPALDIIERAVAALAQRGSNRVALEELAALSQPPRMRS 136 Query: 135 AGAVAAGVPA---AP------AMHEEIDPLLLPVFLEEAQELITGIGETLLALPAAEHRG 185 + A PA AP + +E+D LLPVFLEEAQEL++ IGE L AL +G Sbjct: 137 SPAARDTAPAPWLAPREQQWEGLQDELDQALLPVFLEEAQELMSSIGEGLEAL----RQG 192 Query: 186 VADASLLAELARPLHTLKGSARMVGARHLSRCLHDMETTLQRLALD-DAVQE--SGSLAA 242 VADA L A LARPLHTLKGSARMVGAR LS CLH MET L+ + + V + S +LAA Sbjct: 193 VADAEL-AGLARPLHTLKGSARMVGARRLSHCLHQMETALRGVQTGIEGVHDRSSATLAA 251 Query: 243 L---LALYDQAIEQFNTLEQGLAVSSSPARRDGLADSQ-LTAPLIRIRTTLLDKLLNQVG 298 L L L+D A++ F L ++ DG A + L APLIRIRTT+LDKLLNQVG Sbjct: 252 LETLLGLHDLALDHFAAL----TQAALLLSADGGARAPVLPAPLIRIRTTVLDKLLNQVG 307 Query: 299 EVSIRRAQLDNEITALQGDARALGEQLGKLAEQLGQLQRHCGDTPWVAPPGQDPDSAAPL 358 EVSI R++LDNE+ +LQ +++ALGEQL +L+ +L Q R G A Sbjct: 308 EVSIARSRLDNEVGSLQSESKALGEQLMRLSGELRQWLRQSGTQAQDGGDAAAAMQALAH 367 Query: 359 ALAGSMQEALGEALQHQKQLLQRVLKTREDLRQQGRTTRELQQELMHARMVKFNSMESRM 418 +LA +++A HQ++L + V TRE LRQQ TRELQQELM+ARMVKFNSME RM Sbjct: 368 SLAARLEQAS----LHQRRLQEGVSSTREGLRQQAAHTRELQQELMYARMVKFNSMEVRM 423 Query: 419 QHLARQVALETGKPLTLELSDYRLHIDRAILERLMGPLEHLLRNAAVHGIEDAEVRRAAG 478 QHL RQVA ETGKPL L+LS+ RL IDRAILERLMGPLEHLLRNAAVHGIE AE R A G Sbjct: 424 QHLVRQVAAETGKPLALDLSNCRLQIDRAILERLMGPLEHLLRNAAVHGIESAEQRLAEG 483 Query: 479 KPVSGQLRIQASHEGNEAVIRVSDDGRGLDLQAIRDKARQRGLIEAQQISEARLAELIFE 538 KP G+L +QA+HEGNEAVIRVSDDGRGLDL+AIR KA + G + S+ARLA+LIF+ Sbjct: 484 KPAVGRLTVQATHEGNEAVIRVSDDGRGLDLEAIRQKALELGAAGLAEASQARLADLIFQ 543 Query: 539 PGFSTSTQVSALAGRGVGMDVVRAEVAALGGRMTVHSRAGRGVLFTLYLPLSLAVQHVCL 598 PG STS QVSALAGRG+GMDVVR+EVAALGG M VHS+ G+GV FTLYLPLSLAVQHVCL Sbjct: 544 PGLSTSPQVSALAGRGIGMDVVRSEVAALGGWMRVHSQPGQGVQFTLYLPLSLAVQHVCL 603 Query: 599 LRHGQQPYAIPSTLIERVVQLRSDQAQDALQQRALEFNGQRLALYPLHCLLDEPAHPAWP 658 LRHGQQ +AIPS L++ +VQLR QA+ AL +R+LE G RLAL+P HCLLDE PA Sbjct: 604 LRHGQQHFAIPSMLVDSIVQLRGPQARQALAERSLEHQGSRLALHPWHCLLDEAPEPA-G 662 Query: 659 DPSDSAFALLIKRGDELMVIMADHVSGNREVVVKPVGPQVATLAGVVGATVLGDGQIVLI 718 + SDSA+ LLIKR D LM ++ADHVSGNREVVVKPVGPQ+ATLAGVVGATVLGDGQIVLI Sbjct: 663 EGSDSAYVLLIKRDDGLMAVLADHVSGNREVVVKPVGPQLATLAGVVGATVLGDGQIVLI 722 Query: 719 INPLLLSGSRRADGRAAEPA 738 INPLLL+G+ R DG A P Sbjct: 723 INPLLLAGAGRTDGMAVAPG 742 >gi|300312286|ref|YP_003776378.1| signal-transducing histidine kinase CheA protein [Herbaspirillum seropedicae SmR1] Length = 697 Score = 222 bits (565), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 133/372 (35%), Positives = 214/372 (57%), Gaps = 13/372 (3%) Query: 368 LGEALQHQKQLLQRVLK----TREDL----RQQGRTTRELQQELMHARMVKFNSMESRMQ 419 +GE + Q + QRV K T E L Q R TR+LQ+ +M RM+ + + SR Sbjct: 321 VGELVITQAMIEQRVGKLDPMTHEHLLNSVSQLSRNTRDLQESVMSIRMMPMDYVFSRFP 380 Query: 420 HLARQVALETGKPLTLELSDYRLHIDRAILERLMGPLEHLLRNAAVHGIEDAEVRRAAGK 479 + R +A + GK + +D+ ++ER++ PL HL+RN+ HGIE + RRA+GK Sbjct: 381 RMVRDLAHKLGKQVEFVTHGAATELDKGLIERIVDPLTHLVRNSIDHGIELPDARRASGK 440 Query: 480 PVSGQLRIQASHEGNEAVIRVSDDGRGLDLQAIRDKARQRGLIEAQQISEARLAELIFEP 539 +G L + A H+G +I V+DDG GL+ + I KA+Q+G+ +S+A + +LIFEP Sbjct: 441 SEAGTLSLSAEHQGGNIIIEVTDDGGGLNREKILAKAKQQGMPVTDNLSDAEVWQLIFEP 500 Query: 540 GFSTSTQVSALAGRGVGMDVVRAEVAALGGRMTVHSRAGRGVLFTLYLPLSLAVQHVCLL 599 GFST+ QV+ ++GRGVGMDVV+ + A+GG + + S G G ++ LPL+LA+ + Sbjct: 501 GFSTAEQVTDVSGRGVGMDVVKRNILAMGGAVDIRSSKGFGTTISISLPLTLAILDGMSI 560 Query: 600 RHGQQPYAIP-STLIERVVQLRSDQAQDALQQRALEFNGQRLALYPLHCLLDEPAHPAWP 658 R G++ Y +P ++E + L D + + Q + L G+ L L PL+ + + P++ Sbjct: 561 RIGEEVYILPLGYVVESLQPLAQDIKEISGQGQVLRVRGEYLPLIPLYQIFN--IEPSFT 618 Query: 659 DPSDSAFALLIKRGDELMVIMADHVSGNREVVVKPVGPQVATLAGVVGATVLGDGQIVLI 718 DPS +L G + + D + G +++VVK + +AG+ GAT+LGDG + LI Sbjct: 619 DPSQGLVVILESDGKK-AALFVDDLIGQQQIVVKNLESNYRKVAGISGATILGDGGVALI 677 Query: 719 IN-PLLLSGSRR 729 ++ LL SR+ Sbjct: 678 VDVAALLRSSRQ 689 >gi|300309957|ref|YP_003774049.1| chemotaxis histidine kinase [Herbaspirillum seropedicae SmR1] Length = 725 Score = 189 bits (480), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 111/315 (35%), Positives = 175/315 (55%), Gaps = 10/315 (3%) Query: 407 RMVKFNSMESRMQHLARQVALETGKPLTLELSDYRLHIDRAILERLMGPLEHLLRNAAVH 466 RMV+ N + R + R +A + GK + L ++ +D++++ERL PL H++RNA H Sbjct: 392 RMVQINEVFQRFPRIVRDIARDLGKDIDLVMTGSDTELDKSMVERLADPLMHIVRNAIDH 451 Query: 467 GIEDAEVRRAAGKPVSGQLRIQASHEGNEAVIRVSDDGRGLDLQAIRDKARQRGLIEAQ- 525 GIE A R AAGKP L++ A HE VI V DDGRG+D +AI KA +GL Sbjct: 452 GIEPAAERLAAGKPAKASLQLNAIHESGSVVIEVMDDGRGMDREAILAKAVAQGLASPDA 511 Query: 526 QISEARLAELIFEPGFSTSTQVSALAGRGVGMDVVRAEVAALGGRMTVHSRAGRGVLFTL 585 ++S+A + +FEPGFST+ QV+ L+GRGVGMDVVR + AL G +++ + GRG + L Sbjct: 512 ELSDAEIYRFVFEPGFSTARQVTELSGRGVGMDVVRRNIEALHGEVSIDTGRGRGTVVRL 571 Query: 586 YLPLSLAVQHVCLLRHGQQPYAIPSTLIERVVQLRSDQAQDALQQRALEFNGQRLALYPL 645 LPL+LA+ + G + IP ++ + + Q + + + L PL Sbjct: 572 RLPLTLAIISGFQVVVGNAVFVIPLDMVVECIDMPPQQPGSHI----VNVRDEPLPFVPL 627 Query: 646 HCLLDEPAHPAWPDPSDSAFALLIKRGDELMVIMADHVSGNREVVVKPVGPQVATLAGVV 705 L D PA + ++++ G ++ D + G + V+KP+G + G+ Sbjct: 628 RELFDLPARERGRNS-----LVIVQYGPLRAGLLVDGLLGECQAVIKPLGRLFGKVKGLS 682 Query: 706 GATVLGDGQIVLIIN 720 G+T+LGDG++ LI++ Sbjct: 683 GSTILGDGRVALILD 697 >gi|300311033|ref|YP_003775125.1| chemotaxis histidine kinase [Herbaspirillum seropedicae SmR1] Length = 837 Score = 181 bits (459), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 111/332 (33%), Positives = 179/332 (53%), Gaps = 6/332 (1%) Query: 393 GRTTRELQQELMHARMVKFNSMESRMQHLARQVALETGKPLTLELSDYRLHIDRAILERL 452 R E+Q +M RM+ + + R L R ++ + GK + L L D+ I+E L Sbjct: 503 NRIAEEMQDAIMQVRMMPVSVVFQRFPRLVRDISRKLGKEVQLVLVGEETEADKNIIEAL 562 Query: 453 MGPLEHLLRNAAVHGIEDAEVRRAAGKPVSGQLRIQASHEGNEAVIRVSDDGRGLDLQAI 512 PL H++RN+ HG+E E RRA+GKP G L I A+HEG++ VI + DDG+G+D I Sbjct: 563 ADPLIHIVRNSLDHGLEGPEQRRASGKPALGSLTISAAHEGDQVVIVIEDDGKGIDPALI 622 Query: 513 RDKARQRGLIEAQQ---ISEARLAELIFEPGFSTSTQVSALAGRGVGMDVVRAEVAALGG 569 + KA ++GLI+ Q IS+ L+F GFST+ VS L+GRGVGMDVVR V + G Sbjct: 623 KRKAYEKGLIDEAQLERISDQDAVNLVFSSGFSTAEVVSDLSGRGVGMDVVRNAVEKVNG 682 Query: 570 RMTVHSRAGRGVLFTLYLPLSLAVQHVCLLRHGQQPYAIPSTLIERVVQLRSDQAQDALQ 629 + +HS +G+G + LPLS+AV V ++ Q + +P + V++ A Sbjct: 683 SLALHSVSGKGTRLQISLPLSMAVTKVMIIESDGQLFGVPMEHVMETVRVPRSSLHFANS 742 Query: 630 QRALEFNGQRLALYPLHCLLDEPAHPAWPDPSDSAFALLIKR-GDELMVIMADHVSGNRE 688 + G L L ++ +L A +D A+L+ R G + + ++ D + Sbjct: 743 SAKMVLRGHILGLKGINQILGIAAEQK--TNADGEVAVLVVRVGGQSVGLVIDDFRETVD 800 Query: 689 VVVKPVGPQVATLAGVVGATVLGDGQIVLIIN 720 V+ KP+ + L+ G+ ++GDG +++++N Sbjct: 801 VIQKPLLGILGGLSLYSGSALMGDGSVLMVLN 832 >gi|300312322|ref|YP_003776414.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 775 Score = 164 bits (414), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 112/353 (31%), Positives = 184/353 (52%), Gaps = 7/353 (1%) Query: 372 LQHQKQLLQRVLKTREDL-RQQGRTTRELQQELMHARMVKFNSMESRMQHLARQVALETG 430 +Q +QLL L + R+ ++ L E + RM F + + + R V G Sbjct: 270 MQQNQQLLGEQLSALDAFDRRSVNLSQRLYDEALACRMRPFADGTAGLARMVRDVGNTLG 329 Query: 431 KPLTLELSDYRLHIDRAILERLMGPLEHLLRNAAVHGIEDAEVRRAAGKPVSGQLRIQAS 490 K + L++ IDR ILE+L P+ HLLRNA HGIE + RRAAGKP G +R++A Sbjct: 330 KSVRLDIVGNTTQIDRDILEKLEAPIGHLLRNAVDHGIESSAQRRAAGKPEQGVIRLEAR 389 Query: 491 HEGNEAVIRVSDDGRGLDLQAIRDKARQRGLIE---AQQISEARLAELIFEPGFSTSTQV 547 H +I V+DDG G+D++ +R RGL A+++SEA L E + P FS V Sbjct: 390 HSAGMLLIEVADDGAGIDIEQVRSAVVARGLSNQETAERLSEAELLEFLLLPSFSLRDTV 449 Query: 548 SALAGRGVGMDVVRAEVAALGGRMTVHSRAGRGVLFTLYLPLSLAVQHVCLLRHGQQPYA 607 + ++GRGVG+DVV + + G + + ++AG+G F + LPL+L+V L+ +PYA Sbjct: 450 TEISGRGVGLDVVADMLKQVRGTIRITTQAGQGSRFLMQLPLTLSVIRSLLVDIAGEPYA 509 Query: 608 IPSTLIERVVQLRSDQAQDALQQRALEFNGQRLALYPLHCLLDEPAHPAWPDPSDSAFAL 667 P + R ++L ++ Q + G+++ L H +L + W S + Sbjct: 510 FPLAYVNRTLRLPAEALQTLEGYQHFSHGGRQVGLVSAHQVLQK---GQWRSRDGSVCVV 566 Query: 668 LIKRGDELMVIMADHVSGNREVVVKPVGPQVATLAGVVGATVLGDGQIVLIIN 720 +I + + D G R +VV+P+ P++ +A V+ ++ DG +LI++ Sbjct: 567 VIGEQEHTYGLAVDAFLGERMLVVQPLDPRLGKIADVLAGALMEDGTPLLILD 619 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.132 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,960,851 Number of extensions: 81063 Number of successful extensions: 465 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 446 Number of HSP's successfully gapped: 7 Length of query: 739 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 647 Effective length of database: 1,184,250 Effective search space: 766209750 Effective search space used: 766209750 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)