BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3739.p
         (305 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313129|ref|YP_003777221.1| drug/metabolite transporter (DM...   534   e-153
gi|300311553|ref|YP_003775645.1| drug/metabolite transporter (DM...    65   5e-12

>gi|300313129|ref|YP_003777221.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score =  534 bits (1375), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 261/304 (85%), Positives = 280/304 (92%)

Query: 1   MQSLWMLVASFLFAVMGVCVKLAGSYYTTSEIVLCRGVIGVLFILGLIRLRGGTLRTPFP 60
           MQSLWMLVASFLF++MGVCVKLA  YY+TSEIVLCRG+IG+  I  L+R+RGGT RTPFP
Sbjct: 1   MQSLWMLVASFLFSIMGVCVKLASDYYSTSEIVLCRGLIGISVIAALVRVRGGTFRTPFP 60

Query: 61  RDHFIRGGVGVISLWMWFYSFSLLPVATATTLNYMSSIWIAVMLFAAGWWQGNKKFEWGL 120
           RDH IRGGVGVISLW+WFYSFSLLPVATATTLNYMSSIWIAVMLFAA WWQGNKKFEWGL
Sbjct: 61  RDHLIRGGVGVISLWLWFYSFSLLPVATATTLNYMSSIWIAVMLFAAAWWQGNKKFEWGL 120

Query: 121 AGTVALSFVGVALLMRPSLNAEQLLGGAISLASGVLSALVYLQVRKLGLLGEPEYRVVFY 180
           A TV LSF+GVALLMRPSL+A+QLLGGAISL SGVLSALVYLQVRKLGLLGEPEYRVVFY
Sbjct: 121 AATVVLSFIGVALLMRPSLDADQLLGGAISLFSGVLSALVYLQVRKLGLLGEPEYRVVFY 180

Query: 181 FSATGVLAGLIGSVVTGRVPLWHSHSWLGVLLVVMIGLTATTAQIAMTRAYRLGNTLVTA 240
           FS TGVLAGL+GSV TGRVPLWHSHSW G  LV+MIGLTAT AQIAMTRAYRLGNTLVTA
Sbjct: 181 FSLTGVLAGLVGSVATGRVPLWHSHSWQGAALVIMIGLTATLAQIAMTRAYRLGNTLVTA 240

Query: 241 NLQYTGIVFSSLFGVLIWNDAPGWIGWLGMAVILASGMLATYRNQKQTQAEARNVPKVDP 300
           NLQYTGIVFSSLFGVL+WNDAPGW+GWLGM VILASG+LATY N + +Q  ARN+PKVDP
Sbjct: 241 NLQYTGIVFSSLFGVLVWNDAPGWLGWLGMGVILASGLLATYHNHRSSQIAARNLPKVDP 300

Query: 301 IATE 304
           IATE
Sbjct: 301 IATE 304


>gi|300311553|ref|YP_003775645.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 314

 Score = 65.5 bits (158), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 114/244 (46%), Gaps = 25/244 (10%)

Query: 66  RGGVGVISLWMWFYSFSLLPVATATTLNYMSSIWIAVMLFAAGWWQGNKKF--EWGLAGT 123
           RG + + S  ++F    ++P+A  T +N+ + +   ++L  + W  G + +   W     
Sbjct: 89  RGALLLGSTLIFFSVLKIVPLAEGTAMNFCAPL---IVLAISPWLLGERSYLSRWI---A 142

Query: 124 VALSFVGVALLMRPSLNAEQLLGGAISLASGVLSALVYLQVRKLGLLGEPEYRVVFYFSA 183
           V + F G+ +++RPS +     G A+ L S +  AL+ +  RK      P   V  ++ A
Sbjct: 143 VLVGFTGMLIVIRPSGDIPPY-GVALGLISALTQALLSILNRKASQADNP--MVTLFYGA 199

Query: 184 TGVLAGLIGSVV-TGRVPL-WHSHSWLGVLLVVMI--GLTATTAQIAMTRAYRLGNTLVT 239
                 L+GSVV T  VP  W SH+   V L +++  G+T+T        AYR     V 
Sbjct: 200 ------LVGSVVSTLLVPFFWTSHTPTMVELAILVSTGITSTIGHFLQNSAYRHAEASVL 253

Query: 240 ANLQYTGIVFSSLFGVLIWNDAPGWIGWLGMAVILASGMLATYRNQKQTQAEARNVPKVD 299
               Y  I+ +   G L++   P  +  LG+A+I ASG+   Y   K+    A  +P  D
Sbjct: 254 TPFFYAQIISACGMGWLVFGQFPDRVTVLGIAIICASGIGIAYIEHKR----AHPLPPAD 309

Query: 300 PIAT 303
           P+ +
Sbjct: 310 PMES 313


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 906,774
Number of extensions: 36653
Number of successful extensions: 215
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 2
Length of query: 305
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,217,395
Effective search space: 267826900
Effective search space used: 267826900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)